Hb_001517_060

Information

Type -
Description -
Location Contig1517: 28729-31277
Sequence    

Annotation

kegg
ID rcu:RCOM_1316960
description phosphoribulose kinase, putative (EC:2.7.1.19)
nr
ID XP_002519002.1
description phosphoribulose kinase, putative [Ricinus communis]
swissprot
ID P25697
description Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana GN=At1g32060 PE=2 SV=1
trembl
ID B9RZ33
description Phosphoribulokinase OS=Ricinus communis GN=RCOM_1316960 PE=3 SV=1
Gene Ontology
ID GO:0009535
description phosphoribulokinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12878: 28573-31289
cDNA
(Sanger)
(ID:Location)		 043_D04.ab1: 30178-31282

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001517_060 0.0 - - phosphoribulose kinase, putative [Ricinus communis]
2 Hb_009093_020 0.0555077801 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
3 Hb_002289_070 0.0573698323 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Jatropha curcas]
4 Hb_002534_090 0.0676419225 - - geranylgeranyl reductase [Hevea brasiliensis]
5 Hb_001579_050 0.0708652258 - - alcohol dehydrogenase, putative [Ricinus communis]
6 Hb_000029_390 0.0725670203 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
7 Hb_000009_470 0.0732745675 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
8 Hb_011381_120 0.0766283854 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
9 Hb_000081_110 0.0781081288 - - nitrate transporter, putative [Ricinus communis]
10 Hb_001289_050 0.0784324496 - - hypothetical protein Poptr_cp075 [Populus trichocarpa]
11 Hb_000841_040 0.0792695741 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
12 Hb_000282_100 0.0872387136 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
13 Hb_014361_120 0.0872714587 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
14 Hb_010080_070 0.0881483221 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
15 Hb_004920_080 0.0902520907 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
16 Hb_023344_040 0.0910914573 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000111_460 0.0943522481 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
18 Hb_004712_230 0.095246193 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]
19 Hb_004631_020 0.0960536592 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
20 Hb_000139_030 0.0964868146 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]

Gene co-expression network

sample Hb_001517_060 Hb_001517_060 Hb_009093_020 Hb_009093_020 Hb_001517_060--Hb_009093_020 Hb_002289_070 Hb_002289_070 Hb_001517_060--Hb_002289_070 Hb_002534_090 Hb_002534_090 Hb_001517_060--Hb_002534_090 Hb_001579_050 Hb_001579_050 Hb_001517_060--Hb_001579_050 Hb_000029_390 Hb_000029_390 Hb_001517_060--Hb_000029_390 Hb_000009_470 Hb_000009_470 Hb_001517_060--Hb_000009_470 Hb_000841_040 Hb_000841_040 Hb_009093_020--Hb_000841_040 Hb_011381_120 Hb_011381_120 Hb_009093_020--Hb_011381_120 Hb_001289_050 Hb_001289_050 Hb_009093_020--Hb_001289_050 Hb_000282_100 Hb_000282_100 Hb_009093_020--Hb_000282_100 Hb_003090_050 Hb_003090_050 Hb_009093_020--Hb_003090_050 Hb_002289_070--Hb_002534_090 Hb_014361_120 Hb_014361_120 Hb_002289_070--Hb_014361_120 Hb_002289_070--Hb_011381_120 Hb_002701_250 Hb_002701_250 Hb_002289_070--Hb_002701_250 Hb_002289_070--Hb_009093_020 Hb_002413_050 Hb_002413_050 Hb_002534_090--Hb_002413_050 Hb_011537_130 Hb_011537_130 Hb_002534_090--Hb_011537_130 Hb_002534_090--Hb_000009_470 Hb_002534_090--Hb_011381_120 Hb_015807_020 Hb_015807_020 Hb_001579_050--Hb_015807_020 Hb_001579_050--Hb_001289_050 Hb_000139_030 Hb_000139_030 Hb_001579_050--Hb_000139_030 Hb_000081_110 Hb_000081_110 Hb_001579_050--Hb_000081_110 Hb_001579_050--Hb_002534_090 Hb_004920_080 Hb_004920_080 Hb_000029_390--Hb_004920_080 Hb_002995_060 Hb_002995_060 Hb_000029_390--Hb_002995_060 Hb_000029_390--Hb_000282_100 Hb_000029_390--Hb_009093_020 Hb_004631_020 Hb_004631_020 Hb_000029_390--Hb_004631_020 Hb_011344_030 Hb_011344_030 Hb_000009_470--Hb_011344_030 Hb_000009_470--Hb_004631_020 Hb_007044_020 Hb_007044_020 Hb_000009_470--Hb_007044_020 Hb_004712_230 Hb_004712_230 Hb_000009_470--Hb_004712_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.911979 22.2011 102.763 51.7663 0.203408 0.0417514
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.858474 0.216113 0 7.54625 439.677

CAGE analysis