Hb_000081_110

Information

Type -
Description -
Location Contig81: 221614-224218
Sequence    

Annotation

kegg
ID rcu:RCOM_0853520
description nitrate transporter, putative
nr
ID XP_002517444.1
description nitrate transporter, putative [Ricinus communis]
swissprot
ID Q9LV10
description Protein NRT1/ PTR FAMILY 2.11 OS=Arabidopsis thaliana GN=NPF2.11 PE=1 SV=1
trembl
ID B9RUJ9
description Nitrate transporter, putative OS=Ricinus communis GN=RCOM_0853520 PE=4 SV=1
Gene Ontology
ID GO:0016020
description nitrate

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59200: 221704-223149 , PASA_asmbl_59201: 223255-224166
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000081_110 0.0 - - nitrate transporter, putative [Ricinus communis]
2 Hb_000483_440 0.0762542943 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001517_060 0.0781081288 - - phosphoribulose kinase, putative [Ricinus communis]
4 Hb_007426_070 0.0822373008 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
5 Hb_000139_030 0.0832477316 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
6 Hb_001579_050 0.083888304 - - alcohol dehydrogenase, putative [Ricinus communis]
7 Hb_000017_210 0.0843872429 - - PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
8 Hb_020367_040 0.0882334636 - - hypothetical protein JCGZ_01061 [Jatropha curcas]
9 Hb_005305_070 0.0887018073 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
10 Hb_002701_250 0.0914099332 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
11 Hb_002289_070 0.0953831564 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Jatropha curcas]
12 Hb_000482_180 0.0971226403 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
13 Hb_163950_040 0.0980250405 - - PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic [Jatropha curcas]
14 Hb_048755_030 0.100927143 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
15 Hb_000441_080 0.1011913604 - - calmodulin binding protein, putative [Ricinus communis]
16 Hb_004146_030 0.1032995305 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_002534_090 0.1051513324 - - geranylgeranyl reductase [Hevea brasiliensis]
18 Hb_007904_110 0.1053885062 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
19 Hb_000011_440 0.1058237267 - - PREDICTED: GDSL esterase/lipase 1 [Populus euphratica]
20 Hb_010080_070 0.1060275025 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000081_110 Hb_000081_110 Hb_000483_440 Hb_000483_440 Hb_000081_110--Hb_000483_440 Hb_001517_060 Hb_001517_060 Hb_000081_110--Hb_001517_060 Hb_007426_070 Hb_007426_070 Hb_000081_110--Hb_007426_070 Hb_000139_030 Hb_000139_030 Hb_000081_110--Hb_000139_030 Hb_001579_050 Hb_001579_050 Hb_000081_110--Hb_001579_050 Hb_000017_210 Hb_000017_210 Hb_000081_110--Hb_000017_210 Hb_000483_440--Hb_000017_210 Hb_000483_440--Hb_007426_070 Hb_000694_080 Hb_000694_080 Hb_000483_440--Hb_000694_080 Hb_004146_030 Hb_004146_030 Hb_000483_440--Hb_004146_030 Hb_005305_070 Hb_005305_070 Hb_000483_440--Hb_005305_070 Hb_009093_020 Hb_009093_020 Hb_001517_060--Hb_009093_020 Hb_002289_070 Hb_002289_070 Hb_001517_060--Hb_002289_070 Hb_002534_090 Hb_002534_090 Hb_001517_060--Hb_002534_090 Hb_001517_060--Hb_001579_050 Hb_000029_390 Hb_000029_390 Hb_001517_060--Hb_000029_390 Hb_000009_470 Hb_000009_470 Hb_001517_060--Hb_000009_470 Hb_007426_070--Hb_000017_210 Hb_007426_070--Hb_004146_030 Hb_007426_070--Hb_000694_080 Hb_000482_030 Hb_000482_030 Hb_007426_070--Hb_000482_030 Hb_000139_030--Hb_001579_050 Hb_057880_020 Hb_057880_020 Hb_000139_030--Hb_057880_020 Hb_000462_160 Hb_000462_160 Hb_000139_030--Hb_000462_160 Hb_020367_040 Hb_020367_040 Hb_000139_030--Hb_020367_040 Hb_048755_030 Hb_048755_030 Hb_000139_030--Hb_048755_030 Hb_015807_020 Hb_015807_020 Hb_001579_050--Hb_015807_020 Hb_001289_050 Hb_001289_050 Hb_001579_050--Hb_001289_050 Hb_001579_050--Hb_002534_090 Hb_000017_210--Hb_000694_080 Hb_000017_210--Hb_000482_030 Hb_000017_210--Hb_004146_030 Hb_000017_210--Hb_005305_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.22952 12.2562 6.38507 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.157803 0.0709511 0 1.84182 46.222

CAGE analysis