Hb_000694_080

Information

Type -
Description -
Location Contig694: 142435-146275
Sequence    

Annotation

kegg
ID rcu:RCOM_1316960
description phosphoribulose kinase, putative (EC:2.7.1.19)
nr
ID XP_002519002.1
description phosphoribulose kinase, putative [Ricinus communis]
swissprot
ID P25697
description Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana GN=At1g32060 PE=2 SV=1
trembl
ID B9RZ33
description Phosphoribulokinase OS=Ricinus communis GN=RCOM_1316960 PE=3 SV=1
Gene Ontology
ID GO:0005524
description phosphoribulokinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54542: 142413-146264
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000694_080 0.0 - - phosphoribulose kinase, putative [Ricinus communis]
2 Hb_000017_210 0.0429685653 - - PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
3 Hb_000482_030 0.048428688 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like isoform X1 [Populus euphratica]
4 Hb_087599_010 0.0526739159 - - PREDICTED: tropinone reductase homolog [Solanum tuberosum]
5 Hb_007426_070 0.066584677 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
6 Hb_000483_440 0.0680858125 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000012_370 0.0818667001 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003536_020 0.0876153205 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
9 Hb_002762_050 0.0882752816 - - PREDICTED: uncharacterized protein LOC105640359 [Jatropha curcas]
10 Hb_000101_330 0.0917267786 - - -
11 Hb_003777_080 0.0924163261 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Populus euphratica]
12 Hb_004146_030 0.0926692814 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_001564_120 0.0935582361 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
14 Hb_000185_010 0.0936364934 - - Alliin lyase precursor, putative [Ricinus communis]
15 Hb_005305_070 0.0948268514 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
16 Hb_007477_060 0.0961165235 - - unknown [Medicago truncatula]
17 Hb_002333_040 0.0973684581 - - hypothetical protein CISIN_1g015895mg [Citrus sinensis]
18 Hb_026437_020 0.0976325536 - - ring finger protein, putative [Ricinus communis]
19 Hb_001856_240 0.0977483628 transcription factor TF Family: TCP Plastid transcription factor 1, putative isoform 1 [Theobroma cacao]
20 Hb_002093_020 0.0978289192 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]

Gene co-expression network

sample Hb_000694_080 Hb_000694_080 Hb_000017_210 Hb_000017_210 Hb_000694_080--Hb_000017_210 Hb_000482_030 Hb_000482_030 Hb_000694_080--Hb_000482_030 Hb_087599_010 Hb_087599_010 Hb_000694_080--Hb_087599_010 Hb_007426_070 Hb_007426_070 Hb_000694_080--Hb_007426_070 Hb_000483_440 Hb_000483_440 Hb_000694_080--Hb_000483_440 Hb_000012_370 Hb_000012_370 Hb_000694_080--Hb_000012_370 Hb_000017_210--Hb_000483_440 Hb_000017_210--Hb_007426_070 Hb_000017_210--Hb_000482_030 Hb_004146_030 Hb_004146_030 Hb_000017_210--Hb_004146_030 Hb_005305_070 Hb_005305_070 Hb_000017_210--Hb_005305_070 Hb_000482_030--Hb_007426_070 Hb_000841_040 Hb_000841_040 Hb_000482_030--Hb_000841_040 Hb_000111_460 Hb_000111_460 Hb_000482_030--Hb_000111_460 Hb_008748_050 Hb_008748_050 Hb_000482_030--Hb_008748_050 Hb_003777_080 Hb_003777_080 Hb_087599_010--Hb_003777_080 Hb_002762_050 Hb_002762_050 Hb_087599_010--Hb_002762_050 Hb_000185_010 Hb_000185_010 Hb_087599_010--Hb_000185_010 Hb_002093_020 Hb_002093_020 Hb_087599_010--Hb_002093_020 Hb_153258_040 Hb_153258_040 Hb_087599_010--Hb_153258_040 Hb_007426_070--Hb_000483_440 Hb_007426_070--Hb_004146_030 Hb_000081_110 Hb_000081_110 Hb_007426_070--Hb_000081_110 Hb_000483_440--Hb_000081_110 Hb_000483_440--Hb_004146_030 Hb_000483_440--Hb_005305_070 Hb_001191_060 Hb_001191_060 Hb_000012_370--Hb_001191_060 Hb_176135_010 Hb_176135_010 Hb_000012_370--Hb_176135_010 Hb_000012_370--Hb_008748_050 Hb_086022_020 Hb_086022_020 Hb_000012_370--Hb_086022_020 Hb_000012_370--Hb_000185_010 Hb_000320_370 Hb_000320_370 Hb_000012_370--Hb_000320_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0146958 7.27408 77.1265 27.6698 0 0.0232354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.161579 0.0635635 0 7.04186 178.33

CAGE analysis