Hb_007426_070

Information

Type -
Description -
Location Contig7426: 81479-86791
Sequence    

Annotation

kegg
ID rcu:RCOM_0631490
description (S)-2-hydroxy-acid oxidase, putative (EC:1.1.3.15)
nr
ID XP_012072124.1
description PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
swissprot
ID Q9LRR9
description Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Arabidopsis thaliana GN=GLO1 PE=1 SV=1
trembl
ID A0A067L0G9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04633 PE=4 SV=1
Gene Ontology
ID GO:0010181
description aldolase-type tim barrel family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56541: 81552-87174 , PASA_asmbl_56542: 86757-87174
cDNA
(Sanger)
(ID:Location)		 053_I22.ab1: 81641-83890

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007426_070 0.0 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
2 Hb_000017_210 0.0464919195 - - PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
3 Hb_000483_440 0.0543005576 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004146_030 0.0555775833 - - UDP-glucosyltransferase, putative [Ricinus communis]
5 Hb_000694_080 0.066584677 - - phosphoribulose kinase, putative [Ricinus communis]
6 Hb_000482_030 0.0682328701 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like isoform X1 [Populus euphratica]
7 Hb_000081_110 0.0822373008 - - nitrate transporter, putative [Ricinus communis]
8 Hb_000026_060 0.0965227487 - - beta-1,3-glucanase [Manihot esculenta]
9 Hb_001691_170 0.0995704114 - - PREDICTED: callose synthase 12-like [Glycine max]
10 Hb_005305_070 0.1007464773 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
11 Hb_001517_060 0.1014557128 - - phosphoribulose kinase, putative [Ricinus communis]
12 Hb_009093_020 0.1040167809 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
13 Hb_001579_050 0.1041616453 - - alcohol dehydrogenase, putative [Ricinus communis]
14 Hb_000841_040 0.1056712959 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
15 Hb_003171_040 0.1059621715 - - multidrug resistance pump, putative [Ricinus communis]
16 Hb_003536_020 0.1060705118 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
17 Hb_087599_010 0.1136518561 - - PREDICTED: tropinone reductase homolog [Solanum tuberosum]
18 Hb_002333_040 0.1140739331 - - hypothetical protein CISIN_1g015895mg [Citrus sinensis]
19 Hb_015824_010 0.1176516606 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
20 Hb_000007_270 0.1185694291 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007426_070 Hb_007426_070 Hb_000017_210 Hb_000017_210 Hb_007426_070--Hb_000017_210 Hb_000483_440 Hb_000483_440 Hb_007426_070--Hb_000483_440 Hb_004146_030 Hb_004146_030 Hb_007426_070--Hb_004146_030 Hb_000694_080 Hb_000694_080 Hb_007426_070--Hb_000694_080 Hb_000482_030 Hb_000482_030 Hb_007426_070--Hb_000482_030 Hb_000081_110 Hb_000081_110 Hb_007426_070--Hb_000081_110 Hb_000017_210--Hb_000483_440 Hb_000017_210--Hb_000694_080 Hb_000017_210--Hb_000482_030 Hb_000017_210--Hb_004146_030 Hb_005305_070 Hb_005305_070 Hb_000017_210--Hb_005305_070 Hb_000483_440--Hb_000694_080 Hb_000483_440--Hb_000081_110 Hb_000483_440--Hb_004146_030 Hb_000483_440--Hb_005305_070 Hb_000026_060 Hb_000026_060 Hb_004146_030--Hb_000026_060 Hb_000858_050 Hb_000858_050 Hb_004146_030--Hb_000858_050 Hb_001579_050 Hb_001579_050 Hb_004146_030--Hb_001579_050 Hb_000694_080--Hb_000482_030 Hb_087599_010 Hb_087599_010 Hb_000694_080--Hb_087599_010 Hb_000012_370 Hb_000012_370 Hb_000694_080--Hb_000012_370 Hb_000841_040 Hb_000841_040 Hb_000482_030--Hb_000841_040 Hb_000111_460 Hb_000111_460 Hb_000482_030--Hb_000111_460 Hb_008748_050 Hb_008748_050 Hb_000482_030--Hb_008748_050 Hb_001517_060 Hb_001517_060 Hb_000081_110--Hb_001517_060 Hb_000139_030 Hb_000139_030 Hb_000081_110--Hb_000139_030 Hb_000081_110--Hb_001579_050 Hb_000081_110--Hb_000017_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0998952 42.387 254.867 73.1001 0.0679767 0.116118
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.11453 0.653746 0.181872 35.9686 699.64

CAGE analysis