Hb_003777_080

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig3777: 91399-94278
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06920g
description POPTRDRAFT_551322; trihelix DNA-binding family protein
nr
ID XP_011044212.1
description PREDICTED: trihelix transcription factor GT-2-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9GTJ3
description Trihelix DNA-binding family protein OS=Populus trichocarpa GN=POPTR_0002s06920g PE=4 SV=1
Gene Ontology
ID GO:0005488
description trihelix transcription factor gt-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38430: 91233-94488
cDNA
(Sanger)
(ID:Location)		 001_C19.ab1: 91233-92715 , 014_D08.ab1: 91464-91747 , 039_F18.ab1: 91238-91552

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003777_080 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Populus euphratica]
2 Hb_087599_010 0.0603247778 - - PREDICTED: tropinone reductase homolog [Solanum tuberosum]
3 Hb_001975_100 0.0660789016 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
4 Hb_153258_040 0.0674453751 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
5 Hb_005063_030 0.0686935761 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
6 Hb_004970_060 0.0698640127 - - PREDICTED: uncharacterized protein LOC100259061 [Vitis vinifera]
7 Hb_156093_010 0.0735140102 - - hypothetical protein RCOM_0504250 [Ricinus communis]
8 Hb_000254_130 0.0762917179 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
9 Hb_006970_030 0.0779272922 - - synaptotagmin, putative [Ricinus communis]
10 Hb_002121_050 0.0780264938 - - hypothetical protein EUGRSUZ_D02586 [Eucalyptus grandis]
11 Hb_001564_120 0.079571847 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
12 Hb_000069_760 0.0812624884 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
13 Hb_002375_030 0.0813654418 - - F-box family protein [Populus trichocarpa]
14 Hb_008195_070 0.0815538638 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_001999_230 0.0820511021 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
16 Hb_000390_160 0.0824379759 - - PREDICTED: adenosine kinase [Jatropha curcas]
17 Hb_000049_100 0.0839151208 - - Photosystem II reaction center W protein, putative [Ricinus communis]
18 Hb_008225_050 0.0847314959 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
19 Hb_007537_040 0.0848274064 - - PREDICTED: uncharacterized protein LOC105803495 [Gossypium raimondii]
20 Hb_001292_030 0.0850474856 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003777_080 Hb_003777_080 Hb_087599_010 Hb_087599_010 Hb_003777_080--Hb_087599_010 Hb_001975_100 Hb_001975_100 Hb_003777_080--Hb_001975_100 Hb_153258_040 Hb_153258_040 Hb_003777_080--Hb_153258_040 Hb_005063_030 Hb_005063_030 Hb_003777_080--Hb_005063_030 Hb_004970_060 Hb_004970_060 Hb_003777_080--Hb_004970_060 Hb_156093_010 Hb_156093_010 Hb_003777_080--Hb_156093_010 Hb_000694_080 Hb_000694_080 Hb_087599_010--Hb_000694_080 Hb_002762_050 Hb_002762_050 Hb_087599_010--Hb_002762_050 Hb_000185_010 Hb_000185_010 Hb_087599_010--Hb_000185_010 Hb_002093_020 Hb_002093_020 Hb_087599_010--Hb_002093_020 Hb_087599_010--Hb_153258_040 Hb_001975_100--Hb_005063_030 Hb_000254_130 Hb_000254_130 Hb_001975_100--Hb_000254_130 Hb_001006_040 Hb_001006_040 Hb_001975_100--Hb_001006_040 Hb_001292_030 Hb_001292_030 Hb_001975_100--Hb_001292_030 Hb_001564_120 Hb_001564_120 Hb_001975_100--Hb_001564_120 Hb_008225_050 Hb_008225_050 Hb_001975_100--Hb_008225_050 Hb_001946_120 Hb_001946_120 Hb_153258_040--Hb_001946_120 Hb_044478_010 Hb_044478_010 Hb_153258_040--Hb_044478_010 Hb_153258_040--Hb_004970_060 Hb_001999_230 Hb_001999_230 Hb_153258_040--Hb_001999_230 Hb_006970_030 Hb_006970_030 Hb_153258_040--Hb_006970_030 Hb_005063_030--Hb_001564_120 Hb_005063_030--Hb_000254_130 Hb_000101_330 Hb_000101_330 Hb_005063_030--Hb_000101_330 Hb_005063_030--Hb_001292_030 Hb_005063_030--Hb_001999_230 Hb_003025_160 Hb_003025_160 Hb_004970_060--Hb_003025_160 Hb_004970_060--Hb_008225_050 Hb_007537_040 Hb_007537_040 Hb_004970_060--Hb_007537_040 Hb_004970_060--Hb_000254_130 Hb_004970_060--Hb_001999_230 Hb_002121_050 Hb_002121_050 Hb_156093_010--Hb_002121_050 Hb_156093_010--Hb_007537_040 Hb_156093_010--Hb_000185_010 Hb_000369_110 Hb_000369_110 Hb_156093_010--Hb_000369_110 Hb_156093_010--Hb_004970_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0209143 1.13484 15.3095 6.82754 0 0.0252648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0667721 0.0634029 0.823088 25.865

CAGE analysis