Hb_004970_060

Information

Type -
Description -
Location Contig4970: 28679-55051
Sequence    

Annotation

kegg
ID vvi:100259061
description uncharacterized LOC100259061
nr
ID XP_002282841.2
description PREDICTED: uncharacterized protein LOC100259061 [Vitis vinifera]
swissprot
ID O65351
description Subtilisin-like protease SBT1.7 OS=Arabidopsis thaliana GN=SBT1.7 PE=1 SV=1
trembl
ID A0A0D9YHY5
description Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1
Gene Ontology
ID GO:0004252
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45544: 47591-50010 , PASA_asmbl_45545: 52820-52954
cDNA
(Sanger)
(ID:Location)		 027_E02.ab1: 47591-48306

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004970_060 0.0 - - PREDICTED: uncharacterized protein LOC100259061 [Vitis vinifera]
2 Hb_003025_160 0.0514669728 - - Protein HVA22, putative [Ricinus communis]
3 Hb_008225_050 0.0530819262 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
4 Hb_007537_040 0.0594743211 - - PREDICTED: uncharacterized protein LOC105803495 [Gossypium raimondii]
5 Hb_000254_130 0.0621095615 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
6 Hb_001999_230 0.0653230038 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
7 Hb_153258_040 0.0668236773 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
8 Hb_033363_040 0.0695266237 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
9 Hb_003777_080 0.0698640127 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Populus euphratica]
10 Hb_011214_130 0.0699400152 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 [Jatropha curcas]
11 Hb_003371_080 0.0715059201 - - hypothetical protein POPTR_0001s23660g [Populus trichocarpa]
12 Hb_001975_100 0.0734045965 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
13 Hb_156093_010 0.0763058596 - - hypothetical protein RCOM_0504250 [Ricinus communis]
14 Hb_005063_030 0.0778494039 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
15 Hb_000369_110 0.0783742587 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_002259_090 0.0790763698 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
17 Hb_002121_050 0.079370528 - - hypothetical protein EUGRSUZ_D02586 [Eucalyptus grandis]
18 Hb_001946_120 0.0797706003 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
19 Hb_001007_070 0.0813466984 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
20 Hb_006970_030 0.0830450561 - - synaptotagmin, putative [Ricinus communis]

Gene co-expression network

sample Hb_004970_060 Hb_004970_060 Hb_003025_160 Hb_003025_160 Hb_004970_060--Hb_003025_160 Hb_008225_050 Hb_008225_050 Hb_004970_060--Hb_008225_050 Hb_007537_040 Hb_007537_040 Hb_004970_060--Hb_007537_040 Hb_000254_130 Hb_000254_130 Hb_004970_060--Hb_000254_130 Hb_001999_230 Hb_001999_230 Hb_004970_060--Hb_001999_230 Hb_153258_040 Hb_153258_040 Hb_004970_060--Hb_153258_040 Hb_003025_160--Hb_008225_050 Hb_003025_160--Hb_000254_130 Hb_002259_090 Hb_002259_090 Hb_003025_160--Hb_002259_090 Hb_003025_160--Hb_007537_040 Hb_003025_160--Hb_001999_230 Hb_008225_050--Hb_007537_040 Hb_008225_050--Hb_000254_130 Hb_002752_020 Hb_002752_020 Hb_008225_050--Hb_002752_020 Hb_001975_100 Hb_001975_100 Hb_008225_050--Hb_001975_100 Hb_000369_110 Hb_000369_110 Hb_007537_040--Hb_000369_110 Hb_001735_040 Hb_001735_040 Hb_007537_040--Hb_001735_040 Hb_007537_040--Hb_002752_020 Hb_000254_130--Hb_001975_100 Hb_000254_130--Hb_001999_230 Hb_005063_030 Hb_005063_030 Hb_000254_130--Hb_005063_030 Hb_000254_130--Hb_002752_020 Hb_001007_070 Hb_001007_070 Hb_001999_230--Hb_001007_070 Hb_000099_120 Hb_000099_120 Hb_001999_230--Hb_000099_120 Hb_000497_050 Hb_000497_050 Hb_001999_230--Hb_000497_050 Hb_001564_120 Hb_001564_120 Hb_001999_230--Hb_001564_120 Hb_001999_230--Hb_001975_100 Hb_001946_120 Hb_001946_120 Hb_153258_040--Hb_001946_120 Hb_044478_010 Hb_044478_010 Hb_153258_040--Hb_044478_010 Hb_003777_080 Hb_003777_080 Hb_153258_040--Hb_003777_080 Hb_153258_040--Hb_001999_230 Hb_006970_030 Hb_006970_030 Hb_153258_040--Hb_006970_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0375897 2.77067 27.0021 16.3764 0.0459404 0.0072346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0124129 0.00488461 0 1.61841 43.2391

CAGE analysis