Hb_000099_120

Information

Type -
Description -
Location Contig99: 151622-158141
Sequence    

Annotation

kegg
ID rcu:RCOM_1689500
description Transmembrane protein TPARL, putative
nr
ID XP_012086796.1
description PREDICTED: GDT1-like protein 1, chloroplastic isoform X3 [Jatropha curcas]
swissprot
ID Q94AX5
description GDT1-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=At1g64150 PE=2 SV=2
trembl
ID A0A067JMZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20512 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64726: 151643-154754 , PASA_asmbl_64727: 151643-158144 , PASA_asmbl_64728: 152288-153103 , PASA_asmbl_64729: 154808-156500
cDNA
(Sanger)
(ID:Location)		 009_L08.ab1: 152233-154650

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000099_120 0.0 - - PREDICTED: GDT1-like protein 1, chloroplastic isoform X3 [Jatropha curcas]
2 Hb_001007_070 0.0464867397 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
3 Hb_001999_230 0.0485194159 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
4 Hb_000392_470 0.0518118514 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001564_120 0.055382897 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
6 Hb_004338_050 0.0637902317 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
7 Hb_000254_130 0.0661906895 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
8 Hb_005063_030 0.0683466707 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
9 Hb_000906_080 0.0715471463 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
10 Hb_001975_100 0.0721300425 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
11 Hb_000497_050 0.0721828629 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
12 Hb_005054_120 0.0725252083 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
13 Hb_000098_040 0.0763706003 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
14 Hb_001958_060 0.0767343088 - - PREDICTED: calcium uptake protein 1, mitochondrial-like [Jatropha curcas]
15 Hb_001946_120 0.0769815432 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
16 Hb_009193_070 0.0783696253 - - fatty acid elongase 3-ketoacyl-CoA synthase 1 [Arabidopsis thaliana]
17 Hb_153258_040 0.080211693 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
18 Hb_001277_350 0.0807571333 - - early light-induced protein, putative [Ricinus communis]
19 Hb_002752_020 0.0824332141 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
20 Hb_008225_050 0.083952914 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]

Gene co-expression network

sample Hb_000099_120 Hb_000099_120 Hb_001007_070 Hb_001007_070 Hb_000099_120--Hb_001007_070 Hb_001999_230 Hb_001999_230 Hb_000099_120--Hb_001999_230 Hb_000392_470 Hb_000392_470 Hb_000099_120--Hb_000392_470 Hb_001564_120 Hb_001564_120 Hb_000099_120--Hb_001564_120 Hb_004338_050 Hb_004338_050 Hb_000099_120--Hb_004338_050 Hb_000254_130 Hb_000254_130 Hb_000099_120--Hb_000254_130 Hb_001007_070--Hb_001999_230 Hb_005054_120 Hb_005054_120 Hb_001007_070--Hb_005054_120 Hb_002259_090 Hb_002259_090 Hb_001007_070--Hb_002259_090 Hb_009193_070 Hb_009193_070 Hb_001007_070--Hb_009193_070 Hb_001007_070--Hb_000254_130 Hb_001999_230--Hb_000254_130 Hb_000497_050 Hb_000497_050 Hb_001999_230--Hb_000497_050 Hb_001999_230--Hb_001564_120 Hb_001975_100 Hb_001975_100 Hb_001999_230--Hb_001975_100 Hb_000392_470--Hb_001564_120 Hb_000392_470--Hb_004338_050 Hb_000392_470--Hb_001999_230 Hb_000392_470--Hb_001007_070 Hb_000392_470--Hb_000497_050 Hb_005063_030 Hb_005063_030 Hb_001564_120--Hb_005063_030 Hb_000098_040 Hb_000098_040 Hb_001564_120--Hb_000098_040 Hb_001564_120--Hb_001975_100 Hb_001564_120--Hb_001007_070 Hb_004338_050--Hb_000497_050 Hb_002752_020 Hb_002752_020 Hb_004338_050--Hb_002752_020 Hb_004338_050--Hb_001999_230 Hb_001307_050 Hb_001307_050 Hb_004338_050--Hb_001307_050 Hb_008225_050 Hb_008225_050 Hb_004338_050--Hb_008225_050 Hb_146255_030 Hb_146255_030 Hb_004338_050--Hb_146255_030 Hb_000254_130--Hb_001975_100 Hb_000254_130--Hb_008225_050 Hb_003025_160 Hb_003025_160 Hb_000254_130--Hb_003025_160 Hb_000254_130--Hb_005063_030 Hb_000254_130--Hb_002752_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.928551 7.79309 5.51654 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.164409 0.0862347 0 0.171856 16.7624

CAGE analysis