Hb_044478_010

Information

Type -
Description -
Location Contig44478: 1-917
Sequence    

Annotation

kegg
ID rcu:RCOM_1592620
description plastoquinol-plastocyanin reductase, putative
nr
ID XP_002510294.1
description plastoquinol-plastocyanin reductase, putative [Ricinus communis]
swissprot
ID P80883
description Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea GN=petM PE=1 SV=1
trembl
ID B9R7K1
description Plastoquinol-plastocyanin reductase, putative OS=Ricinus communis GN=RCOM_1592620 PE=3 SV=1
Gene Ontology
ID GO:0009512
description cytochrome b6-f complex subunit 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_044478_010 0.0 - - plastoquinol-plastocyanin reductase, putative [Ricinus communis]
2 Hb_153258_040 0.0646110184 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
3 Hb_002042_210 0.0648881649 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
4 Hb_131466_010 0.0683129318 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
5 Hb_001946_120 0.0720582009 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
6 Hb_005111_040 0.0747000443 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
7 Hb_001999_230 0.0756499441 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
8 Hb_004052_030 0.0761426298 - - PREDICTED: uncharacterized protein LOC105640637 [Jatropha curcas]
9 Hb_006291_050 0.0775795664 - - PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_002387_010 0.0776139785 - - PREDICTED: protein STAY-GREEN LIKE, chloroplastic [Jatropha curcas]
11 Hb_005694_120 0.078306901 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
12 Hb_000984_160 0.0833375888 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
13 Hb_001007_070 0.0854571639 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
14 Hb_000099_120 0.0854630602 - - PREDICTED: GDT1-like protein 1, chloroplastic isoform X3 [Jatropha curcas]
15 Hb_000392_470 0.086636428 - - conserved hypothetical protein [Ricinus communis]
16 Hb_011214_130 0.0876270988 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 [Jatropha curcas]
17 Hb_000139_360 0.0876685487 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
18 Hb_008195_090 0.0877571087 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004607_110 0.0878702272 - - PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
20 Hb_028491_010 0.0901597227 - - hypothetical protein JCGZ_12857 [Jatropha curcas]

Gene co-expression network

sample Hb_044478_010 Hb_044478_010 Hb_153258_040 Hb_153258_040 Hb_044478_010--Hb_153258_040 Hb_002042_210 Hb_002042_210 Hb_044478_010--Hb_002042_210 Hb_131466_010 Hb_131466_010 Hb_044478_010--Hb_131466_010 Hb_001946_120 Hb_001946_120 Hb_044478_010--Hb_001946_120 Hb_005111_040 Hb_005111_040 Hb_044478_010--Hb_005111_040 Hb_001999_230 Hb_001999_230 Hb_044478_010--Hb_001999_230 Hb_153258_040--Hb_001946_120 Hb_004970_060 Hb_004970_060 Hb_153258_040--Hb_004970_060 Hb_003777_080 Hb_003777_080 Hb_153258_040--Hb_003777_080 Hb_153258_040--Hb_001999_230 Hb_006970_030 Hb_006970_030 Hb_153258_040--Hb_006970_030 Hb_002042_210--Hb_131466_010 Hb_006291_050 Hb_006291_050 Hb_002042_210--Hb_006291_050 Hb_002805_280 Hb_002805_280 Hb_002042_210--Hb_002805_280 Hb_003033_020 Hb_003033_020 Hb_002042_210--Hb_003033_020 Hb_002042_210--Hb_005111_040 Hb_029991_010 Hb_029991_010 Hb_131466_010--Hb_029991_010 Hb_131466_010--Hb_006291_050 Hb_009193_070 Hb_009193_070 Hb_131466_010--Hb_009193_070 Hb_004607_110 Hb_004607_110 Hb_131466_010--Hb_004607_110 Hb_028491_010 Hb_028491_010 Hb_131466_010--Hb_028491_010 Hb_005694_120 Hb_005694_120 Hb_001946_120--Hb_005694_120 Hb_001007_070 Hb_001007_070 Hb_001946_120--Hb_001007_070 Hb_000984_160 Hb_000984_160 Hb_001946_120--Hb_000984_160 Hb_000099_120 Hb_000099_120 Hb_001946_120--Hb_000099_120 Hb_005111_040--Hb_006291_050 Hb_000482_180 Hb_000482_180 Hb_005111_040--Hb_000482_180 Hb_005111_040--Hb_001007_070 Hb_005111_040--Hb_009193_070 Hb_005111_040--Hb_131466_010 Hb_001999_230--Hb_001007_070 Hb_000254_130 Hb_000254_130 Hb_001999_230--Hb_000254_130 Hb_001999_230--Hb_000099_120 Hb_000497_050 Hb_000497_050 Hb_001999_230--Hb_000497_050 Hb_001564_120 Hb_001564_120 Hb_001999_230--Hb_001564_120 Hb_001975_100 Hb_001975_100 Hb_001999_230--Hb_001975_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.246997 12.7993 161.252 149.37 0.19482 0.623868
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.11146 1.14819 0 15.3042 369.529

CAGE analysis