Hb_028491_010

Information

Type -
Description -
Location Contig28491: 2053-4992
Sequence    

Annotation

kegg
ID rcu:RCOM_0685770
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.23 1.3.1.74)
nr
ID KDP33401.1
description hypothetical protein JCGZ_12857 [Jatropha curcas]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A067KB03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12857 PE=3 SV=1
Gene Ontology
ID GO:0004672
description receptor-like protein kinase at3g47110

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29848: 1953-2706
cDNA
(Sanger)
(ID:Location)		 010_D20.ab1: 1953-2453

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028491_010 0.0 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
2 Hb_004607_110 0.0382345469 - - PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
3 Hb_001141_100 0.0460586455 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
4 Hb_029991_010 0.0544305856 - - hypothetical protein PRUPE_ppa001615mg [Prunus persica]
5 Hb_001277_130 0.0558247837 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
6 Hb_008847_050 0.0569631986 - - conserved hypothetical protein [Ricinus communis]
7 Hb_147028_010 0.0572833396 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Prunus mume]
8 Hb_009193_070 0.059393486 - - fatty acid elongase 3-ketoacyl-CoA synthase 1 [Arabidopsis thaliana]
9 Hb_001735_040 0.0597205625 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
10 Hb_000803_080 0.0642795947 desease resistance Gene Name: ABC_tran ATP-binding cassette transporter, putative [Ricinus communis]
11 Hb_131466_010 0.0648090473 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
12 Hb_004338_050 0.068413821 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
13 Hb_008536_020 0.0716111032 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
14 Hb_086300_010 0.0744674027 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
15 Hb_001999_230 0.074486229 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
16 Hb_003913_120 0.0747995075 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
17 Hb_001307_050 0.0774507601 - - PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Jatropha curcas]
18 Hb_000497_050 0.0809355005 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
19 Hb_001199_110 0.0809997838 - - PREDICTED: uncharacterized protein ycf36 isoform X1 [Jatropha curcas]
20 Hb_006615_090 0.0816209594 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_028491_010 Hb_028491_010 Hb_004607_110 Hb_004607_110 Hb_028491_010--Hb_004607_110 Hb_001141_100 Hb_001141_100 Hb_028491_010--Hb_001141_100 Hb_029991_010 Hb_029991_010 Hb_028491_010--Hb_029991_010 Hb_001277_130 Hb_001277_130 Hb_028491_010--Hb_001277_130 Hb_008847_050 Hb_008847_050 Hb_028491_010--Hb_008847_050 Hb_147028_010 Hb_147028_010 Hb_028491_010--Hb_147028_010 Hb_004607_110--Hb_029991_010 Hb_004607_110--Hb_001141_100 Hb_131466_010 Hb_131466_010 Hb_004607_110--Hb_131466_010 Hb_001735_040 Hb_001735_040 Hb_004607_110--Hb_001735_040 Hb_000803_080 Hb_000803_080 Hb_004607_110--Hb_000803_080 Hb_001141_100--Hb_008847_050 Hb_001141_100--Hb_147028_010 Hb_001141_100--Hb_001277_130 Hb_009193_070 Hb_009193_070 Hb_001141_100--Hb_009193_070 Hb_029991_010--Hb_131466_010 Hb_001307_050 Hb_001307_050 Hb_029991_010--Hb_001307_050 Hb_000179_010 Hb_000179_010 Hb_029991_010--Hb_000179_010 Hb_000497_050 Hb_000497_050 Hb_029991_010--Hb_000497_050 Hb_001277_130--Hb_008847_050 Hb_001277_130--Hb_147028_010 Hb_002259_090 Hb_002259_090 Hb_001277_130--Hb_002259_090 Hb_001277_130--Hb_004607_110 Hb_008847_050--Hb_002259_090 Hb_008847_050--Hb_009193_070 Hb_003025_160 Hb_003025_160 Hb_008847_050--Hb_003025_160 Hb_147028_010--Hb_000803_080 Hb_086300_010 Hb_086300_010 Hb_147028_010--Hb_086300_010 Hb_147028_010--Hb_001735_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.302773 3.58109 3.79589 0 0.0125237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0715021 7.65793

CAGE analysis