Hb_008847_050

Information

Type -
Description -
Location Contig8847: 62961-63353
Sequence    

Annotation

kegg
ID rcu:RCOM_0225950
description hypothetical protein
nr
ID XP_002530166.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SVZ7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0225950 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61482: 62954-63415
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008847_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002259_090 0.0395584907 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
3 Hb_009193_070 0.052345018 - - fatty acid elongase 3-ketoacyl-CoA synthase 1 [Arabidopsis thaliana]
4 Hb_001141_100 0.0554676737 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
5 Hb_001277_130 0.0560861273 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
6 Hb_028491_010 0.0569631986 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
7 Hb_003025_160 0.0621658894 - - Protein HVA22, putative [Ricinus communis]
8 Hb_001007_070 0.0642551045 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
9 Hb_001999_230 0.0671232379 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
10 Hb_004338_050 0.0713352309 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
11 Hb_008225_050 0.0716088122 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
12 Hb_004607_110 0.0720490354 - - PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
13 Hb_001047_210 0.0727009523 - - PSI reaction center subunit II [Citrus sinensis]
14 Hb_147028_010 0.0771791123 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Prunus mume]
15 Hb_001735_040 0.0780187582 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
16 Hb_006615_090 0.079148779 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
17 Hb_008536_020 0.0794318174 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
18 Hb_003925_120 0.08126136 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
19 Hb_000254_130 0.0835731244 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
20 Hb_002752_020 0.0849261456 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_008847_050 Hb_008847_050 Hb_002259_090 Hb_002259_090 Hb_008847_050--Hb_002259_090 Hb_009193_070 Hb_009193_070 Hb_008847_050--Hb_009193_070 Hb_001141_100 Hb_001141_100 Hb_008847_050--Hb_001141_100 Hb_001277_130 Hb_001277_130 Hb_008847_050--Hb_001277_130 Hb_028491_010 Hb_028491_010 Hb_008847_050--Hb_028491_010 Hb_003025_160 Hb_003025_160 Hb_008847_050--Hb_003025_160 Hb_001007_070 Hb_001007_070 Hb_002259_090--Hb_001007_070 Hb_002259_090--Hb_003025_160 Hb_001999_230 Hb_001999_230 Hb_002259_090--Hb_001999_230 Hb_005054_120 Hb_005054_120 Hb_002259_090--Hb_005054_120 Hb_002259_090--Hb_001277_130 Hb_003925_120 Hb_003925_120 Hb_009193_070--Hb_003925_120 Hb_009193_070--Hb_001007_070 Hb_009193_070--Hb_028491_010 Hb_006291_050 Hb_006291_050 Hb_009193_070--Hb_006291_050 Hb_009193_070--Hb_001999_230 Hb_001141_100--Hb_028491_010 Hb_147028_010 Hb_147028_010 Hb_001141_100--Hb_147028_010 Hb_004607_110 Hb_004607_110 Hb_001141_100--Hb_004607_110 Hb_001141_100--Hb_001277_130 Hb_001141_100--Hb_009193_070 Hb_001277_130--Hb_028491_010 Hb_001277_130--Hb_147028_010 Hb_001277_130--Hb_004607_110 Hb_028491_010--Hb_004607_110 Hb_029991_010 Hb_029991_010 Hb_028491_010--Hb_029991_010 Hb_028491_010--Hb_147028_010 Hb_008225_050 Hb_008225_050 Hb_003025_160--Hb_008225_050 Hb_000254_130 Hb_000254_130 Hb_003025_160--Hb_000254_130 Hb_004970_060 Hb_004970_060 Hb_003025_160--Hb_004970_060 Hb_007537_040 Hb_007537_040 Hb_003025_160--Hb_007537_040 Hb_003025_160--Hb_001999_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.22793 8.14009 7.44916 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.139295 15.2791

CAGE analysis