Hb_001141_100

Information

Type -
Description -
Location Contig1141: 104226-109682
Sequence    

Annotation

kegg
ID pop:POPTR_0008s15550g
description POPTRDRAFT_419137; hypothetical protein
nr
ID XP_012069676.1
description PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
swissprot
ID Q9LR47
description Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 OS=Arabidopsis thaliana GN=CVP2 PE=1 SV=2
trembl
ID A0A067L831
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02207 PE=4 SV=1
Gene Ontology
ID GO:0004519
description cvp2 like 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04237: 104486-105702
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_100 0.0 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
2 Hb_028491_010 0.0460586455 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
3 Hb_008847_050 0.0554676737 - - conserved hypothetical protein [Ricinus communis]
4 Hb_147028_010 0.0556609904 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Prunus mume]
5 Hb_004607_110 0.0590380054 - - PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
6 Hb_001277_130 0.0607530302 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
7 Hb_009193_070 0.0653050864 - - fatty acid elongase 3-ketoacyl-CoA synthase 1 [Arabidopsis thaliana]
8 Hb_002259_090 0.0723086928 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
9 Hb_001199_110 0.0741911043 - - PREDICTED: uncharacterized protein ycf36 isoform X1 [Jatropha curcas]
10 Hb_001999_230 0.0754000354 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
11 Hb_003025_160 0.0758804092 - - Protein HVA22, putative [Ricinus communis]
12 Hb_000803_080 0.0762622903 desease resistance Gene Name: ABC_tran ATP-binding cassette transporter, putative [Ricinus communis]
13 Hb_001007_070 0.0787926186 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
14 Hb_006615_090 0.0791183334 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
15 Hb_004338_050 0.079627898 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
16 Hb_086300_010 0.0812204461 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
17 Hb_001047_210 0.0821475111 - - PSI reaction center subunit II [Citrus sinensis]
18 Hb_001735_040 0.0828810528 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
19 Hb_003925_120 0.0832662053 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
20 Hb_029991_010 0.0841092126 - - hypothetical protein PRUPE_ppa001615mg [Prunus persica]

Gene co-expression network

sample Hb_001141_100 Hb_001141_100 Hb_028491_010 Hb_028491_010 Hb_001141_100--Hb_028491_010 Hb_008847_050 Hb_008847_050 Hb_001141_100--Hb_008847_050 Hb_147028_010 Hb_147028_010 Hb_001141_100--Hb_147028_010 Hb_004607_110 Hb_004607_110 Hb_001141_100--Hb_004607_110 Hb_001277_130 Hb_001277_130 Hb_001141_100--Hb_001277_130 Hb_009193_070 Hb_009193_070 Hb_001141_100--Hb_009193_070 Hb_028491_010--Hb_004607_110 Hb_029991_010 Hb_029991_010 Hb_028491_010--Hb_029991_010 Hb_028491_010--Hb_001277_130 Hb_028491_010--Hb_008847_050 Hb_028491_010--Hb_147028_010 Hb_002259_090 Hb_002259_090 Hb_008847_050--Hb_002259_090 Hb_008847_050--Hb_009193_070 Hb_008847_050--Hb_001277_130 Hb_003025_160 Hb_003025_160 Hb_008847_050--Hb_003025_160 Hb_000803_080 Hb_000803_080 Hb_147028_010--Hb_000803_080 Hb_147028_010--Hb_001277_130 Hb_086300_010 Hb_086300_010 Hb_147028_010--Hb_086300_010 Hb_001735_040 Hb_001735_040 Hb_147028_010--Hb_001735_040 Hb_004607_110--Hb_029991_010 Hb_131466_010 Hb_131466_010 Hb_004607_110--Hb_131466_010 Hb_004607_110--Hb_001735_040 Hb_004607_110--Hb_000803_080 Hb_001277_130--Hb_002259_090 Hb_001277_130--Hb_004607_110 Hb_003925_120 Hb_003925_120 Hb_009193_070--Hb_003925_120 Hb_001007_070 Hb_001007_070 Hb_009193_070--Hb_001007_070 Hb_009193_070--Hb_028491_010 Hb_006291_050 Hb_006291_050 Hb_009193_070--Hb_006291_050 Hb_001999_230 Hb_001999_230 Hb_009193_070--Hb_001999_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0334837 0.739095 6.23544 6.4952 0.0317718 0.029629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0119521 0 0.0853517 12.9186

CAGE analysis