Hb_003925_120

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig3925: 136225-139936
Sequence    

Annotation

kegg
ID pop:POPTR_0012s01300g
description POPTRDRAFT_569471; NBS-LRR resistance gene-like protein ARGH30
nr
ID KDP43125.1
description hypothetical protein JCGZ_26658 [Jatropha curcas]
swissprot
ID B0W6M9
description Leucine-rich repeat protein soc-2 homolog OS=Culex quinquefasciatus GN=Sur-8 PE=3 SV=1
trembl
ID A0A067LF36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26658 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein rga3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003925_120 0.0 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
2 Hb_009193_070 0.0502442039 - - fatty acid elongase 3-ketoacyl-CoA synthase 1 [Arabidopsis thaliana]
3 Hb_000329_430 0.0569009485 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE10 [Jatropha curcas]
4 Hb_008847_050 0.08126136 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001141_100 0.0832662053 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
6 Hb_028491_010 0.0835570149 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
7 Hb_006615_090 0.0857118345 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
8 Hb_006291_050 0.0858946785 - - PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_001007_070 0.086354993 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
10 Hb_001307_050 0.0869022116 - - PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Jatropha curcas]
11 Hb_004607_110 0.0877677228 - - PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
12 Hb_002421_150 0.0898891473 - - hypothetical protein PRUPE_ppa020511mg [Prunus persica]
13 Hb_000826_010 0.0920548739 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000098_040 0.0924403226 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
15 Hb_000307_100 0.093287221 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
16 Hb_001277_130 0.0941165366 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
17 Hb_004338_050 0.0942688848 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
18 Hb_001699_110 0.0963939766 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
19 Hb_029991_010 0.0969927419 - - hypothetical protein PRUPE_ppa001615mg [Prunus persica]
20 Hb_131466_010 0.0970211212 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]

Gene co-expression network

sample Hb_003925_120 Hb_003925_120 Hb_009193_070 Hb_009193_070 Hb_003925_120--Hb_009193_070 Hb_000329_430 Hb_000329_430 Hb_003925_120--Hb_000329_430 Hb_008847_050 Hb_008847_050 Hb_003925_120--Hb_008847_050 Hb_001141_100 Hb_001141_100 Hb_003925_120--Hb_001141_100 Hb_028491_010 Hb_028491_010 Hb_003925_120--Hb_028491_010 Hb_006615_090 Hb_006615_090 Hb_003925_120--Hb_006615_090 Hb_009193_070--Hb_008847_050 Hb_001007_070 Hb_001007_070 Hb_009193_070--Hb_001007_070 Hb_009193_070--Hb_028491_010 Hb_006291_050 Hb_006291_050 Hb_009193_070--Hb_006291_050 Hb_001999_230 Hb_001999_230 Hb_009193_070--Hb_001999_230 Hb_000307_100 Hb_000307_100 Hb_000329_430--Hb_000307_100 Hb_000098_040 Hb_000098_040 Hb_000329_430--Hb_000098_040 Hb_009771_090 Hb_009771_090 Hb_000329_430--Hb_009771_090 Hb_000826_010 Hb_000826_010 Hb_000329_430--Hb_000826_010 Hb_000352_230 Hb_000352_230 Hb_000329_430--Hb_000352_230 Hb_002259_090 Hb_002259_090 Hb_008847_050--Hb_002259_090 Hb_008847_050--Hb_001141_100 Hb_001277_130 Hb_001277_130 Hb_008847_050--Hb_001277_130 Hb_008847_050--Hb_028491_010 Hb_003025_160 Hb_003025_160 Hb_008847_050--Hb_003025_160 Hb_001141_100--Hb_028491_010 Hb_147028_010 Hb_147028_010 Hb_001141_100--Hb_147028_010 Hb_004607_110 Hb_004607_110 Hb_001141_100--Hb_004607_110 Hb_001141_100--Hb_001277_130 Hb_001141_100--Hb_009193_070 Hb_028491_010--Hb_004607_110 Hb_029991_010 Hb_029991_010 Hb_028491_010--Hb_029991_010 Hb_028491_010--Hb_001277_130 Hb_028491_010--Hb_147028_010 Hb_001199_110 Hb_001199_110 Hb_006615_090--Hb_001199_110 Hb_002477_190 Hb_002477_190 Hb_006615_090--Hb_002477_190 Hb_005010_030 Hb_005010_030 Hb_006615_090--Hb_005010_030 Hb_001047_210 Hb_001047_210 Hb_006615_090--Hb_001047_210 Hb_006615_090--Hb_001141_100 Hb_006615_090--Hb_008847_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0155906 0.0841572 0.0943614 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.233568

CAGE analysis