Hb_000352_230

Information

Type -
Description -
Location Contig352: 208412-210891
Sequence    

Annotation

kegg
ID rcu:RCOM_1443660
description glyceraldehyde 3-phosphate dehydrogenase, putative (EC:1.2.1.13)
nr
ID XP_012067413.1
description PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID P12858
description Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2
trembl
ID B9RGT1
description Glyceraldehyde-3-phosphate dehydrogenase OS=Ricinus communis GN=RCOM_1443660 PE=3 SV=1
Gene Ontology
ID GO:0016620
description glyceraldehyde-3-phosphate dehydrogenase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36585: 208487-210766
cDNA
(Sanger)
(ID:Location)		 001_P14.ab1: 209193-210742 , 013_F04.ab1: 209197-210745 , 026_E10.ab1: 209504-210745 , 035_F15.ab1: 209193-210766 , 037_H06.ab1: 209204-210742

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_230 0.0 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_009771_090 0.0346539342 - - -
3 Hb_000098_040 0.0381398662 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
4 Hb_000545_180 0.0386413049 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
5 Hb_002809_030 0.0393292985 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000307_100 0.0530867655 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
7 Hb_014361_120 0.0559162715 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
8 Hb_000320_370 0.0571291977 - - PREDICTED: ATP synthase gamma chain, chloroplastic [Jatropha curcas]
9 Hb_000329_430 0.0664116146 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE10 [Jatropha curcas]
10 Hb_001564_120 0.0669778698 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
11 Hb_002818_130 0.0743893954 - - cytochrome P450, putative [Ricinus communis]
12 Hb_011381_120 0.0769079226 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
13 Hb_002289_070 0.0786417165 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Jatropha curcas]
14 Hb_001269_030 0.078676479 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
15 Hb_000826_010 0.0792845808 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000111_460 0.0795704868 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
17 Hb_001191_060 0.0799797179 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
18 Hb_000589_340 0.0801975656 - - unknown [Populus trichocarpa x Populus deltoides]
19 Hb_001416_130 0.0814616977 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007044_270 0.0833283698 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000352_230 Hb_000352_230 Hb_009771_090 Hb_009771_090 Hb_000352_230--Hb_009771_090 Hb_000098_040 Hb_000098_040 Hb_000352_230--Hb_000098_040 Hb_000545_180 Hb_000545_180 Hb_000352_230--Hb_000545_180 Hb_002809_030 Hb_002809_030 Hb_000352_230--Hb_002809_030 Hb_000307_100 Hb_000307_100 Hb_000352_230--Hb_000307_100 Hb_014361_120 Hb_014361_120 Hb_000352_230--Hb_014361_120 Hb_009771_090--Hb_000098_040 Hb_000329_430 Hb_000329_430 Hb_009771_090--Hb_000329_430 Hb_009771_090--Hb_000545_180 Hb_009771_090--Hb_000307_100 Hb_009771_090--Hb_014361_120 Hb_000098_040--Hb_000307_100 Hb_001564_120 Hb_001564_120 Hb_000098_040--Hb_001564_120 Hb_000098_040--Hb_000329_430 Hb_000098_040--Hb_002809_030 Hb_000545_180--Hb_014361_120 Hb_000545_180--Hb_000098_040 Hb_001269_030 Hb_001269_030 Hb_000545_180--Hb_001269_030 Hb_001416_130 Hb_001416_130 Hb_000545_180--Hb_001416_130 Hb_000320_370 Hb_000320_370 Hb_002809_030--Hb_000320_370 Hb_002809_030--Hb_000307_100 Hb_001348_160 Hb_001348_160 Hb_002809_030--Hb_001348_160 Hb_001191_060 Hb_001191_060 Hb_002809_030--Hb_001191_060 Hb_000307_100--Hb_000329_430 Hb_010697_020 Hb_010697_020 Hb_000307_100--Hb_010697_020 Hb_002289_070 Hb_002289_070 Hb_014361_120--Hb_002289_070 Hb_011381_120 Hb_011381_120 Hb_014361_120--Hb_011381_120 Hb_014361_120--Hb_000098_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0486631 52.6893 411.16 222.849 0 0.112186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.548115 0.184821 0.0775893 1.40713 1128.9

CAGE analysis