Hb_001269_030

Information

Type -
Description -
Location Contig1269: 27306-39846
Sequence    

Annotation

kegg
ID rcu:RCOM_0471640
description ATP-binding cassette transporter, putative (EC:3.6.3.41)
nr
ID XP_012073071.1
description PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
swissprot
ID Q7PC87
description ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1
trembl
ID A0A067KXJ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06051 PE=4 SV=1
Gene Ontology
ID GO:0016020
description atp-binding cassette

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_030 0.0 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
2 Hb_000545_180 0.0599543633 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
3 Hb_001892_080 0.0635941021 - - Clavata3/esr-related 16, putative [Theobroma cacao]
4 Hb_009771_090 0.0670884702 - - -
5 Hb_000826_010 0.0764682003 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000373_160 0.0778152431 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
7 Hb_001028_040 0.0784217623 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
8 Hb_000352_230 0.078676479 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_002368_060 0.0796843608 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002701_250 0.0812065797 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
11 Hb_014361_120 0.081718449 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
12 Hb_031069_040 0.0824043104 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_000101_330 0.0853081456 - - -
14 Hb_000307_150 0.0908954475 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
15 Hb_006570_030 0.091989098 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
16 Hb_005054_120 0.092339439 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
17 Hb_001416_130 0.092714282 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000098_040 0.0931729795 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
19 Hb_000139_310 0.0943023066 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
20 Hb_002421_150 0.094539393 - - hypothetical protein PRUPE_ppa020511mg [Prunus persica]

Gene co-expression network

sample Hb_001269_030 Hb_001269_030 Hb_000545_180 Hb_000545_180 Hb_001269_030--Hb_000545_180 Hb_001892_080 Hb_001892_080 Hb_001269_030--Hb_001892_080 Hb_009771_090 Hb_009771_090 Hb_001269_030--Hb_009771_090 Hb_000826_010 Hb_000826_010 Hb_001269_030--Hb_000826_010 Hb_000373_160 Hb_000373_160 Hb_001269_030--Hb_000373_160 Hb_001028_040 Hb_001028_040 Hb_001269_030--Hb_001028_040 Hb_000352_230 Hb_000352_230 Hb_000545_180--Hb_000352_230 Hb_014361_120 Hb_014361_120 Hb_000545_180--Hb_014361_120 Hb_000545_180--Hb_009771_090 Hb_000098_040 Hb_000098_040 Hb_000545_180--Hb_000098_040 Hb_001416_130 Hb_001416_130 Hb_000545_180--Hb_001416_130 Hb_001892_080--Hb_001416_130 Hb_000139_310 Hb_000139_310 Hb_001892_080--Hb_000139_310 Hb_000307_150 Hb_000307_150 Hb_001892_080--Hb_000307_150 Hb_001892_080--Hb_001028_040 Hb_000589_340 Hb_000589_340 Hb_001892_080--Hb_000589_340 Hb_009771_090--Hb_000352_230 Hb_009771_090--Hb_000098_040 Hb_000329_430 Hb_000329_430 Hb_009771_090--Hb_000329_430 Hb_000307_100 Hb_000307_100 Hb_009771_090--Hb_000307_100 Hb_009771_090--Hb_014361_120 Hb_002421_150 Hb_002421_150 Hb_000826_010--Hb_002421_150 Hb_002701_250 Hb_002701_250 Hb_000826_010--Hb_002701_250 Hb_000826_010--Hb_009771_090 Hb_000826_010--Hb_000329_430 Hb_000826_010--Hb_000098_040 Hb_005054_120 Hb_005054_120 Hb_000373_160--Hb_005054_120 Hb_000373_160--Hb_002701_250 Hb_000373_160--Hb_000826_010 Hb_031069_040 Hb_031069_040 Hb_000373_160--Hb_031069_040 Hb_000373_160--Hb_002421_150 Hb_002368_060 Hb_002368_060 Hb_001028_040--Hb_002368_060 Hb_006570_030 Hb_006570_030 Hb_001028_040--Hb_006570_030 Hb_001028_040--Hb_000139_310 Hb_002785_030 Hb_002785_030 Hb_001028_040--Hb_002785_030 Hb_001322_120 Hb_001322_120 Hb_001028_040--Hb_001322_120 Hb_001292_030 Hb_001292_030 Hb_001028_040--Hb_001292_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00309614 0.011283 0.00511874 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0288639

CAGE analysis