Hb_000545_180

Information

Type -
Description -
Location Contig545: 403382-409931
Sequence    

Annotation

kegg
ID rcu:RCOM_0809700
description Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative
nr
ID XP_002520925.1
description Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
swissprot
ID O82660
description Photosystem II stability/assembly factor HCF136, chloroplastic OS=Arabidopsis thaliana GN=HCF136 PE=1 SV=1
trembl
ID B9S4K6
description Photosystem II stability/assembly factor HCF136, chloroplast, putative OS=Ricinus communis GN=RCOM_0809700 PE=4 SV=1
Gene Ontology
ID GO:0009533
description photosystem ii stability assembly factor chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47960: 403419-409830 , PASA_asmbl_47961: 358883-409787
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000545_180 0.0 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
2 Hb_000352_230 0.0386413049 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_014361_120 0.055158247 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
4 Hb_009771_090 0.0563312435 - - -
5 Hb_000098_040 0.0583686049 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
6 Hb_001269_030 0.0599543633 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
7 Hb_001416_130 0.0603146045 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002809_030 0.0683724853 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000101_330 0.0688342475 - - -
10 Hb_001892_080 0.0696101536 - - Clavata3/esr-related 16, putative [Theobroma cacao]
11 Hb_006570_030 0.0697392337 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
12 Hb_000589_340 0.0704529984 - - unknown [Populus trichocarpa x Populus deltoides]
13 Hb_000139_310 0.0716549802 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
14 Hb_001564_120 0.0721522988 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
15 Hb_001028_040 0.0728825314 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
16 Hb_000320_370 0.0730209613 - - PREDICTED: ATP synthase gamma chain, chloroplastic [Jatropha curcas]
17 Hb_000077_380 0.0741940748 - - PREDICTED: protochlorophyllide reductase [Jatropha curcas]
18 Hb_002368_060 0.076341122 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000111_460 0.0766984853 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
20 Hb_002701_250 0.080019057 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]

Gene co-expression network

sample Hb_000545_180 Hb_000545_180 Hb_000352_230 Hb_000352_230 Hb_000545_180--Hb_000352_230 Hb_014361_120 Hb_014361_120 Hb_000545_180--Hb_014361_120 Hb_009771_090 Hb_009771_090 Hb_000545_180--Hb_009771_090 Hb_000098_040 Hb_000098_040 Hb_000545_180--Hb_000098_040 Hb_001269_030 Hb_001269_030 Hb_000545_180--Hb_001269_030 Hb_001416_130 Hb_001416_130 Hb_000545_180--Hb_001416_130 Hb_000352_230--Hb_009771_090 Hb_000352_230--Hb_000098_040 Hb_002809_030 Hb_002809_030 Hb_000352_230--Hb_002809_030 Hb_000307_100 Hb_000307_100 Hb_000352_230--Hb_000307_100 Hb_000352_230--Hb_014361_120 Hb_002289_070 Hb_002289_070 Hb_014361_120--Hb_002289_070 Hb_014361_120--Hb_009771_090 Hb_011381_120 Hb_011381_120 Hb_014361_120--Hb_011381_120 Hb_014361_120--Hb_000098_040 Hb_009771_090--Hb_000098_040 Hb_000329_430 Hb_000329_430 Hb_009771_090--Hb_000329_430 Hb_009771_090--Hb_000307_100 Hb_000098_040--Hb_000307_100 Hb_001564_120 Hb_001564_120 Hb_000098_040--Hb_001564_120 Hb_000098_040--Hb_000329_430 Hb_000098_040--Hb_002809_030 Hb_001892_080 Hb_001892_080 Hb_001269_030--Hb_001892_080 Hb_001269_030--Hb_009771_090 Hb_000826_010 Hb_000826_010 Hb_001269_030--Hb_000826_010 Hb_000373_160 Hb_000373_160 Hb_001269_030--Hb_000373_160 Hb_001028_040 Hb_001028_040 Hb_001269_030--Hb_001028_040 Hb_000139_310 Hb_000139_310 Hb_001416_130--Hb_000139_310 Hb_000589_340 Hb_000589_340 Hb_001416_130--Hb_000589_340 Hb_006570_030 Hb_006570_030 Hb_001416_130--Hb_006570_030 Hb_029079_010 Hb_029079_010 Hb_001416_130--Hb_029079_010 Hb_001416_130--Hb_001892_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.026296 10.5816 64.6496 28.5006 0.0263454 0.0261854
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.209595 0.0706701 0 0.385329 162.924

CAGE analysis