Hb_029079_010

Information

Type -
Description -
Location Contig29079: 208-5721
Sequence    

Annotation

kegg
ID rcu:RCOM_0901450
description receptor-kinase, putative (EC:1.3.1.74 2.7.10.2)
nr
ID XP_002517677.1
description receptor-kinase, putative [Ricinus communis]
swissprot
ID Q9LZV7
description Leucine-rich repeat receptor-like protein kinase PXC2 OS=Arabidopsis thaliana GN=PXC2 PE=2 SV=1
trembl
ID B9RVA8
description Receptor-kinase, putative OS=Ricinus communis GN=RCOM_0901450 PE=4 SV=1
Gene Ontology
ID GO:0016301
description lrr receptor-like serine threonine-protein kinase gso1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029079_010 0.0 - - receptor-kinase, putative [Ricinus communis]
2 Hb_001416_130 0.0504886914 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001277_430 0.0601650022 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
4 Hb_000139_310 0.0650829917 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
5 Hb_001892_080 0.0747957929 - - Clavata3/esr-related 16, putative [Theobroma cacao]
6 Hb_006570_030 0.0784290631 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
7 Hb_000589_340 0.0801558647 - - unknown [Populus trichocarpa x Populus deltoides]
8 Hb_002368_060 0.0824855862 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000545_180 0.0833599086 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
10 Hb_001028_040 0.0842124734 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
11 Hb_001958_060 0.0910829295 - - PREDICTED: calcium uptake protein 1, mitochondrial-like [Jatropha curcas]
12 Hb_117807_020 0.0926396556 - - methyltransferase, putative [Ricinus communis]
13 Hb_002871_180 0.0939450987 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
14 Hb_004712_220 0.0971974938 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000101_330 0.0978612671 - - -
16 Hb_007477_060 0.0984885518 - - unknown [Medicago truncatula]
17 Hb_001269_030 0.1001209171 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
18 Hb_001766_160 0.1006341545 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
19 Hb_000450_050 0.1016790027 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
20 Hb_001322_120 0.1035305812 - - nutrient reservoir, putative [Ricinus communis]

Gene co-expression network

sample Hb_029079_010 Hb_029079_010 Hb_001416_130 Hb_001416_130 Hb_029079_010--Hb_001416_130 Hb_001277_430 Hb_001277_430 Hb_029079_010--Hb_001277_430 Hb_000139_310 Hb_000139_310 Hb_029079_010--Hb_000139_310 Hb_001892_080 Hb_001892_080 Hb_029079_010--Hb_001892_080 Hb_006570_030 Hb_006570_030 Hb_029079_010--Hb_006570_030 Hb_000589_340 Hb_000589_340 Hb_029079_010--Hb_000589_340 Hb_001416_130--Hb_000139_310 Hb_001416_130--Hb_000589_340 Hb_001416_130--Hb_006570_030 Hb_001416_130--Hb_001892_080 Hb_000545_180 Hb_000545_180 Hb_001416_130--Hb_000545_180 Hb_001277_430--Hb_001416_130 Hb_117807_020 Hb_117807_020 Hb_001277_430--Hb_117807_020 Hb_001277_430--Hb_000589_340 Hb_005000_120 Hb_005000_120 Hb_001277_430--Hb_005000_120 Hb_000450_050 Hb_000450_050 Hb_001277_430--Hb_000450_050 Hb_000139_310--Hb_006570_030 Hb_000139_310--Hb_000589_340 Hb_001028_040 Hb_001028_040 Hb_000139_310--Hb_001028_040 Hb_002368_060 Hb_002368_060 Hb_000139_310--Hb_002368_060 Hb_001292_030 Hb_001292_030 Hb_000139_310--Hb_001292_030 Hb_001892_080--Hb_000139_310 Hb_001269_030 Hb_001269_030 Hb_001892_080--Hb_001269_030 Hb_000307_150 Hb_000307_150 Hb_001892_080--Hb_000307_150 Hb_001892_080--Hb_001028_040 Hb_001892_080--Hb_000589_340 Hb_006570_030--Hb_002368_060 Hb_006570_030--Hb_001028_040 Hb_001322_120 Hb_001322_120 Hb_006570_030--Hb_001322_120 Hb_006570_030--Hb_001292_030 Hb_000589_340--Hb_000450_050 Hb_000589_340--Hb_006570_030 Hb_005276_080 Hb_005276_080 Hb_000589_340--Hb_005276_080 Hb_002785_040 Hb_002785_040 Hb_000589_340--Hb_002785_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.142763 1.04496 0.312759 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0350187 0 0 0 2.06568

CAGE analysis