Hb_000307_150

Information

Type -
Description -
Location Contig307: 179417-180316
Sequence    

Annotation

kegg
ID rcu:RCOM_1599540
description hypothetical protein
nr
ID XP_012073721.1
description PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
swissprot
ID Q9SGS4
description Thioredoxin-like protein CDSP32, chloroplastic OS=Arabidopsis thaliana GN=CDSP32 PE=1 SV=1
trembl
ID A0A067KPE1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08164 PE=4 SV=1
Gene Ontology
ID GO:0009941
description thioredoxin-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32427: 179319-180394
cDNA
(Sanger)
(ID:Location)		 001_C17.ab1: 179366-180177 , 003_G18.ab1: 179364-180134 , 005_P18.ab1: 179323-180108 , 011_N19.ab1: 179366-180176 , 013_G18.ab1: 179366-180106 , 029_P14.ab1: 179366-180096 , 033_G20.ab1: 179366-180106 , 051_H06.ab1: 179366-180129 , 051_L17.ab1: 179366-180130

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000307_150 0.0 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
2 Hb_000116_090 0.0577509628 - - catalase [Hevea brasiliensis]
3 Hb_001892_080 0.0640186758 - - Clavata3/esr-related 16, putative [Theobroma cacao]
4 Hb_002871_180 0.0746574642 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
5 Hb_000334_010 0.0839521652 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
6 Hb_001269_030 0.0908954475 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
7 Hb_007477_060 0.0957801082 - - unknown [Medicago truncatula]
8 Hb_006570_030 0.0962665549 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
9 Hb_001416_130 0.096961544 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001604_100 0.0987064433 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
11 Hb_000139_310 0.0997286026 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
12 Hb_000101_330 0.0999044461 - - -
13 Hb_002368_060 0.1003900934 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005433_020 0.1019623472 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
15 Hb_031069_040 0.1021356301 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_029079_010 0.1037596181 - - receptor-kinase, putative [Ricinus communis]
17 Hb_003536_020 0.1041673456 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
18 Hb_000545_180 0.105474241 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
19 Hb_005649_060 0.106571084 - - PREDICTED: uncharacterized protein LOC105644161 [Jatropha curcas]
20 Hb_001028_040 0.1073595137 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]

Gene co-expression network

sample Hb_000307_150 Hb_000307_150 Hb_000116_090 Hb_000116_090 Hb_000307_150--Hb_000116_090 Hb_001892_080 Hb_001892_080 Hb_000307_150--Hb_001892_080 Hb_002871_180 Hb_002871_180 Hb_000307_150--Hb_002871_180 Hb_000334_010 Hb_000334_010 Hb_000307_150--Hb_000334_010 Hb_001269_030 Hb_001269_030 Hb_000307_150--Hb_001269_030 Hb_007477_060 Hb_007477_060 Hb_000307_150--Hb_007477_060 Hb_001699_140 Hb_001699_140 Hb_000116_090--Hb_001699_140 Hb_003536_020 Hb_003536_020 Hb_000116_090--Hb_003536_020 Hb_000116_090--Hb_007477_060 Hb_000116_090--Hb_002871_180 Hb_000101_330 Hb_000101_330 Hb_000116_090--Hb_000101_330 Hb_001416_130 Hb_001416_130 Hb_001892_080--Hb_001416_130 Hb_000139_310 Hb_000139_310 Hb_001892_080--Hb_000139_310 Hb_001892_080--Hb_001269_030 Hb_001028_040 Hb_001028_040 Hb_001892_080--Hb_001028_040 Hb_000589_340 Hb_000589_340 Hb_001892_080--Hb_000589_340 Hb_002871_180--Hb_007477_060 Hb_005649_060 Hb_005649_060 Hb_002871_180--Hb_005649_060 Hb_006570_030 Hb_006570_030 Hb_002871_180--Hb_006570_030 Hb_001766_160 Hb_001766_160 Hb_002871_180--Hb_001766_160 Hb_001322_120 Hb_001322_120 Hb_002871_180--Hb_001322_120 Hb_002871_180--Hb_000101_330 Hb_000334_010--Hb_000116_090 Hb_031069_040 Hb_031069_040 Hb_000334_010--Hb_031069_040 Hb_002799_060 Hb_002799_060 Hb_000334_010--Hb_002799_060 Hb_003299_060 Hb_003299_060 Hb_000334_010--Hb_003299_060 Hb_001604_100 Hb_001604_100 Hb_000334_010--Hb_001604_100 Hb_000545_180 Hb_000545_180 Hb_001269_030--Hb_000545_180 Hb_009771_090 Hb_009771_090 Hb_001269_030--Hb_009771_090 Hb_000826_010 Hb_000826_010 Hb_001269_030--Hb_000826_010 Hb_000373_160 Hb_000373_160 Hb_001269_030--Hb_000373_160 Hb_001269_030--Hb_001028_040 Hb_007477_060--Hb_000101_330 Hb_007477_060--Hb_006570_030 Hb_007477_060--Hb_001766_160 Hb_007477_060--Hb_003536_020 Hb_007477_060--Hb_001322_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.214556 42.2472 160.837 35.2841 0 0.0801802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.173656 0.227609 0.0831632 0.550719 306.573

CAGE analysis