Hb_003299_060

Information

Type -
Description -
Location Contig3299: 84350-88350
Sequence    

Annotation

kegg
ID rcu:RCOM_0698790
description nitrate transporter, putative
nr
ID XP_002520155.1
description nitrate transporter, putative [Ricinus communis]
swissprot
ID Q8RX77
description Protein NRT1/ PTR FAMILY 2.13 OS=Arabidopsis thaliana GN=NPF2.13 PE=1 SV=1
trembl
ID B9S2D6
description Nitrate transporter, putative OS=Ricinus communis GN=RCOM_0698790 PE=4 SV=1
Gene Ontology
ID GO:0016020
description nitrate transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34659: 84620-86321 , PASA_asmbl_34660: 86330-88310
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003299_060 0.0 - - nitrate transporter, putative [Ricinus communis]
2 Hb_144045_010 0.0962734735 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
3 Hb_000027_110 0.0993448212 - - wall-associated kinase, putative [Ricinus communis]
4 Hb_000668_180 0.1126406892 - - hypothetical protein POPTR_0005s16490g [Populus trichocarpa]
5 Hb_000334_010 0.1195884189 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
6 Hb_015824_010 0.1266619768 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
7 Hb_000116_090 0.1309082779 - - catalase [Hevea brasiliensis]
8 Hb_004374_100 0.1379874807 - - PREDICTED: phosphoglycerate mutase-like protein AT74H [Jatropha curcas]
9 Hb_003643_080 0.1383732012 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
10 Hb_001691_170 0.13876202 - - PREDICTED: callose synthase 12-like [Glycine max]
11 Hb_002799_060 0.14391193 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
12 Hb_007253_030 0.1444596929 - - PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Populus euphratica]
13 Hb_000042_310 0.1447198804 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
14 Hb_000644_010 0.144886095 - - PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
15 Hb_000081_110 0.1454253499 - - nitrate transporter, putative [Ricinus communis]
16 Hb_010402_040 0.1473623461 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
17 Hb_033363_030 0.1497320609 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
18 Hb_031069_040 0.1499829503 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_000307_150 0.15086094 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
20 Hb_004407_030 0.151685281 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]

Gene co-expression network

sample Hb_003299_060 Hb_003299_060 Hb_144045_010 Hb_144045_010 Hb_003299_060--Hb_144045_010 Hb_000027_110 Hb_000027_110 Hb_003299_060--Hb_000027_110 Hb_000668_180 Hb_000668_180 Hb_003299_060--Hb_000668_180 Hb_000334_010 Hb_000334_010 Hb_003299_060--Hb_000334_010 Hb_015824_010 Hb_015824_010 Hb_003299_060--Hb_015824_010 Hb_000116_090 Hb_000116_090 Hb_003299_060--Hb_000116_090 Hb_000042_310 Hb_000042_310 Hb_144045_010--Hb_000042_310 Hb_144045_010--Hb_015824_010 Hb_004374_100 Hb_004374_100 Hb_144045_010--Hb_004374_100 Hb_000280_030 Hb_000280_030 Hb_144045_010--Hb_000280_030 Hb_001691_170 Hb_001691_170 Hb_144045_010--Hb_001691_170 Hb_096224_050 Hb_096224_050 Hb_000027_110--Hb_096224_050 Hb_000644_010 Hb_000644_010 Hb_000027_110--Hb_000644_010 Hb_033363_030 Hb_033363_030 Hb_000027_110--Hb_033363_030 Hb_000027_110--Hb_000668_180 Hb_000027_110--Hb_000116_090 Hb_005305_070 Hb_005305_070 Hb_000027_110--Hb_005305_070 Hb_000668_180--Hb_033363_030 Hb_004979_080 Hb_004979_080 Hb_000668_180--Hb_004979_080 Hb_000951_070 Hb_000951_070 Hb_000668_180--Hb_000951_070 Hb_010402_040 Hb_010402_040 Hb_000668_180--Hb_010402_040 Hb_031069_040 Hb_031069_040 Hb_000668_180--Hb_031069_040 Hb_000307_150 Hb_000307_150 Hb_000334_010--Hb_000307_150 Hb_000334_010--Hb_000116_090 Hb_000334_010--Hb_031069_040 Hb_002799_060 Hb_002799_060 Hb_000334_010--Hb_002799_060 Hb_001604_100 Hb_001604_100 Hb_000334_010--Hb_001604_100 Hb_015824_010--Hb_000042_310 Hb_015824_010--Hb_004374_100 Hb_015824_010--Hb_000280_030 Hb_015824_010--Hb_000027_110 Hb_000207_160 Hb_000207_160 Hb_015824_010--Hb_000207_160 Hb_000116_090--Hb_000307_150 Hb_001699_140 Hb_001699_140 Hb_000116_090--Hb_001699_140 Hb_003536_020 Hb_003536_020 Hb_000116_090--Hb_003536_020 Hb_007477_060 Hb_007477_060 Hb_000116_090--Hb_007477_060 Hb_002871_180 Hb_002871_180 Hb_000116_090--Hb_002871_180 Hb_000101_330 Hb_000101_330 Hb_000116_090--Hb_000101_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0101842 20.6229 30.9934 5.73623 0 0.00718863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.242649 0.0293746 0 2.9523 91.5526

CAGE analysis