Hb_015824_010

Information

Type -
Description -
Location Contig15824: 5373-6920
Sequence    

Annotation

kegg
ID pop:POPTR_0015s151101
description hypothetical protein
nr
ID XP_012078598.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID A0A067K8E1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14714 PE=4 SV=1
Gene Ontology
ID GO:0005622
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015824_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
2 Hb_000042_310 0.0875054581 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
3 Hb_004374_100 0.0954594972 - - PREDICTED: phosphoglycerate mutase-like protein AT74H [Jatropha curcas]
4 Hb_144045_010 0.0985177125 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
5 Hb_000280_030 0.1004331939 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
6 Hb_000027_110 0.1041733098 - - wall-associated kinase, putative [Ricinus communis]
7 Hb_000207_160 0.1099751293 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
8 Hb_003536_020 0.1105339457 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
9 Hb_000705_010 0.1136343706 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]
10 Hb_005305_070 0.1154973512 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
11 Hb_000116_090 0.1174610102 - - catalase [Hevea brasiliensis]
12 Hb_007426_070 0.1176516606 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
13 Hb_000483_440 0.1203395821 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000644_010 0.1215733299 - - PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
15 Hb_008143_010 0.1220830535 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
16 Hb_003299_060 0.1266619768 - - nitrate transporter, putative [Ricinus communis]
17 Hb_080922_010 0.1282821877 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
18 Hb_000017_210 0.1320992478 - - PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
19 Hb_096224_050 0.1330156532 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
20 Hb_000638_270 0.1362030874 - - -

Gene co-expression network

sample Hb_015824_010 Hb_015824_010 Hb_000042_310 Hb_000042_310 Hb_015824_010--Hb_000042_310 Hb_004374_100 Hb_004374_100 Hb_015824_010--Hb_004374_100 Hb_144045_010 Hb_144045_010 Hb_015824_010--Hb_144045_010 Hb_000280_030 Hb_000280_030 Hb_015824_010--Hb_000280_030 Hb_000027_110 Hb_000027_110 Hb_015824_010--Hb_000027_110 Hb_000207_160 Hb_000207_160 Hb_015824_010--Hb_000207_160 Hb_000042_310--Hb_004374_100 Hb_000042_310--Hb_000280_030 Hb_000042_310--Hb_144045_010 Hb_000638_270 Hb_000638_270 Hb_000042_310--Hb_000638_270 Hb_000705_010 Hb_000705_010 Hb_000042_310--Hb_000705_010 Hb_004374_100--Hb_000280_030 Hb_004374_100--Hb_000638_270 Hb_004374_100--Hb_000705_010 Hb_004374_100--Hb_144045_010 Hb_003299_060 Hb_003299_060 Hb_144045_010--Hb_003299_060 Hb_144045_010--Hb_000280_030 Hb_001691_170 Hb_001691_170 Hb_144045_010--Hb_001691_170 Hb_000280_030--Hb_000638_270 Hb_000280_030--Hb_000705_010 Hb_002025_220 Hb_002025_220 Hb_000280_030--Hb_002025_220 Hb_096224_050 Hb_096224_050 Hb_000027_110--Hb_096224_050 Hb_000644_010 Hb_000644_010 Hb_000027_110--Hb_000644_010 Hb_033363_030 Hb_033363_030 Hb_000027_110--Hb_033363_030 Hb_000668_180 Hb_000668_180 Hb_000027_110--Hb_000668_180 Hb_000116_090 Hb_000116_090 Hb_000027_110--Hb_000116_090 Hb_005305_070 Hb_005305_070 Hb_000027_110--Hb_005305_070 Hb_003125_090 Hb_003125_090 Hb_000207_160--Hb_003125_090 Hb_000207_160--Hb_096224_050 Hb_000373_010 Hb_000373_010 Hb_000207_160--Hb_000373_010 Hb_000207_160--Hb_005305_070 Hb_000207_160--Hb_000027_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.935038 2.83209 0.630383 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0648912 0 0.44913 5.76492

CAGE analysis