Hb_096224_050

Information

Type -
Description -
Location Contig96224: 29732-31799
Sequence    

Annotation

kegg
ID rcu:RCOM_0205410
description leucine-rich repeat transmembrane protein kinase, putative
nr
ID XP_012077494.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
swissprot
ID C0LGR9
description Probable LRR receptor-like serine/threonine-protein kinase At4g31250 OS=Arabidopsis thaliana GN=At4g31250 PE=2 SV=1
trembl
ID A0A067KBA0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06983 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at4g31250

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63806: 30140-30724 , PASA_asmbl_63807: 31398-31716
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_096224_050 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
2 Hb_007904_110 0.0588555516 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
3 Hb_004979_070 0.059252212 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
4 Hb_000644_010 0.0622977358 - - PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
5 Hb_004979_080 0.0644435594 - - kinase, putative [Ricinus communis]
6 Hb_000027_110 0.0684354474 - - wall-associated kinase, putative [Ricinus communis]
7 Hb_033363_030 0.0687699783 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
8 Hb_025557_060 0.0757819498 transcription factor TF Family: MYB Myb-related protein 306, putative isoform 1 [Theobroma cacao]
9 Hb_000373_010 0.0792924215 - - ATP binding protein, putative [Ricinus communis]
10 Hb_002407_090 0.0818245168 - - hypothetical protein JCGZ_00747 [Jatropha curcas]
11 Hb_007718_030 0.0892093556 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
12 Hb_011028_030 0.0897564166 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005305_070 0.0908695839 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
14 Hb_186844_010 0.0920336774 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
15 Hb_001699_140 0.0957404116 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
16 Hb_046739_010 0.0970137477 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
17 Hb_000270_640 0.09833366 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
18 Hb_119600_030 0.0991632567 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]
19 Hb_011104_020 0.0995533596 - - PREDICTED: ABC transporter B family member 2-like [Jatropha curcas]
20 Hb_004291_050 0.1003333342 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]

Gene co-expression network

sample Hb_096224_050 Hb_096224_050 Hb_007904_110 Hb_007904_110 Hb_096224_050--Hb_007904_110 Hb_004979_070 Hb_004979_070 Hb_096224_050--Hb_004979_070 Hb_000644_010 Hb_000644_010 Hb_096224_050--Hb_000644_010 Hb_004979_080 Hb_004979_080 Hb_096224_050--Hb_004979_080 Hb_000027_110 Hb_000027_110 Hb_096224_050--Hb_000027_110 Hb_033363_030 Hb_033363_030 Hb_096224_050--Hb_033363_030 Hb_007904_110--Hb_004979_070 Hb_005305_070 Hb_005305_070 Hb_007904_110--Hb_005305_070 Hb_119600_030 Hb_119600_030 Hb_007904_110--Hb_119600_030 Hb_025557_060 Hb_025557_060 Hb_007904_110--Hb_025557_060 Hb_007904_110--Hb_004979_080 Hb_004979_070--Hb_004979_080 Hb_004979_070--Hb_025557_060 Hb_004979_070--Hb_119600_030 Hb_004291_050 Hb_004291_050 Hb_004979_070--Hb_004291_050 Hb_003643_080 Hb_003643_080 Hb_000644_010--Hb_003643_080 Hb_000373_010 Hb_000373_010 Hb_000644_010--Hb_000373_010 Hb_000644_010--Hb_004979_080 Hb_000644_010--Hb_000027_110 Hb_002155_020 Hb_002155_020 Hb_000644_010--Hb_002155_020 Hb_004979_080--Hb_033363_030 Hb_000668_180 Hb_000668_180 Hb_004979_080--Hb_000668_180 Hb_000027_110--Hb_033363_030 Hb_000027_110--Hb_000668_180 Hb_000116_090 Hb_000116_090 Hb_000027_110--Hb_000116_090 Hb_000027_110--Hb_005305_070 Hb_033363_030--Hb_000668_180 Hb_046739_010 Hb_046739_010 Hb_033363_030--Hb_046739_010 Hb_011028_030 Hb_011028_030 Hb_033363_030--Hb_011028_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.266182 0.529281 0.314864 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0607653 1.20729

CAGE analysis