Hb_119600_030

Information

Type -
Description -
Location Contig119600: 30472-33036
Sequence    

Annotation

kegg
ID rcu:RCOM_1601960
description hypothetical protein
nr
ID XP_012073593.1
description PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KKX9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08043 PE=4 SV=1
Gene Ontology
ID GO:0005886
description plastid movement impaired1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_119600_030 0.0 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]
2 Hb_007904_110 0.0742312896 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
3 Hb_025557_060 0.0775310061 transcription factor TF Family: MYB Myb-related protein 306, putative isoform 1 [Theobroma cacao]
4 Hb_000373_160 0.0803111411 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
5 Hb_004979_070 0.0825734077 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
6 Hb_002852_010 0.089781504 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
7 Hb_002701_250 0.0922254372 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
8 Hb_005054_120 0.0925773311 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
9 Hb_005694_120 0.0972592673 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
10 Hb_002842_010 0.0980316201 - - sulfate transporter, putative [Ricinus communis]
11 Hb_096224_050 0.0991632567 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
12 Hb_005063_060 0.0999623146 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105647704 [Jatropha curcas]
13 Hb_001699_140 0.1000721025 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
14 Hb_005305_070 0.1000986671 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
15 Hb_007718_030 0.1028845388 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
16 Hb_001541_280 0.1050434067 - - phosphate transporter [Manihot esculenta]
17 Hb_004128_170 0.1052042061 - - hypothetical protein POPTR_0016s08350g [Populus trichocarpa]
18 Hb_033363_030 0.1070840617 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
19 Hb_000826_010 0.1071748645 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002226_090 0.1082078667 - - Stachyose synthase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_119600_030 Hb_119600_030 Hb_007904_110 Hb_007904_110 Hb_119600_030--Hb_007904_110 Hb_025557_060 Hb_025557_060 Hb_119600_030--Hb_025557_060 Hb_000373_160 Hb_000373_160 Hb_119600_030--Hb_000373_160 Hb_004979_070 Hb_004979_070 Hb_119600_030--Hb_004979_070 Hb_002852_010 Hb_002852_010 Hb_119600_030--Hb_002852_010 Hb_002701_250 Hb_002701_250 Hb_119600_030--Hb_002701_250 Hb_007904_110--Hb_004979_070 Hb_096224_050 Hb_096224_050 Hb_007904_110--Hb_096224_050 Hb_005305_070 Hb_005305_070 Hb_007904_110--Hb_005305_070 Hb_007904_110--Hb_025557_060 Hb_004979_080 Hb_004979_080 Hb_007904_110--Hb_004979_080 Hb_018591_020 Hb_018591_020 Hb_025557_060--Hb_018591_020 Hb_025557_060--Hb_096224_050 Hb_025557_060--Hb_004979_070 Hb_001699_140 Hb_001699_140 Hb_025557_060--Hb_001699_140 Hb_005054_120 Hb_005054_120 Hb_000373_160--Hb_005054_120 Hb_000373_160--Hb_002701_250 Hb_000826_010 Hb_000826_010 Hb_000373_160--Hb_000826_010 Hb_001269_030 Hb_001269_030 Hb_000373_160--Hb_001269_030 Hb_031069_040 Hb_031069_040 Hb_000373_160--Hb_031069_040 Hb_002421_150 Hb_002421_150 Hb_000373_160--Hb_002421_150 Hb_004979_070--Hb_096224_050 Hb_004979_070--Hb_004979_080 Hb_004291_050 Hb_004291_050 Hb_004979_070--Hb_004291_050 Hb_002852_010--Hb_005054_120 Hb_000077_380 Hb_000077_380 Hb_002852_010--Hb_000077_380 Hb_002259_090 Hb_002259_090 Hb_002852_010--Hb_002259_090 Hb_003494_090 Hb_003494_090 Hb_002852_010--Hb_003494_090 Hb_002852_010--Hb_001699_140 Hb_005063_030 Hb_005063_030 Hb_002852_010--Hb_005063_030 Hb_002701_250--Hb_000826_010 Hb_002289_070 Hb_002289_070 Hb_002701_250--Hb_002289_070 Hb_020367_040 Hb_020367_040 Hb_002701_250--Hb_020367_040 Hb_000098_040 Hb_000098_040 Hb_002701_250--Hb_000098_040 Hb_000482_180 Hb_000482_180 Hb_002701_250--Hb_000482_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.21166 13.3725 32.5637 24.3483 0.706489 0.317092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.137467 0.081129 0.0773717 1.57295 84.2898

CAGE analysis