Hb_000077_380

Information

Type -
Description -
Location Contig77: 291227-293725
Sequence    

Annotation

kegg
ID rcu:RCOM_1175550
description short-chain dehydrogenase, putative (EC:1.3.1.33)
nr
ID XP_012088312.1
description PREDICTED: protochlorophyllide reductase [Jatropha curcas]
swissprot
ID Q41249
description Protochlorophyllide reductase, chloroplastic OS=Cucumis sativus GN=PORA PE=2 SV=1
trembl
ID A0A067JXA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25811 PE=4 SV=1
Gene Ontology
ID GO:0009535
description protochlorophyllide chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57619: 291174-293658
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_380 0.0 - - PREDICTED: protochlorophyllide reductase [Jatropha curcas]
2 Hb_005063_030 0.0573844176 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
3 Hb_000101_330 0.064268421 - - -
4 Hb_006570_030 0.064787431 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
5 Hb_001975_100 0.0651476736 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
6 Hb_001564_120 0.0688758731 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
7 Hb_002852_010 0.0702932475 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
8 Hb_005054_120 0.0739496942 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
9 Hb_000254_130 0.0740761985 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
10 Hb_000545_180 0.0741940748 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
11 Hb_007477_060 0.0742281184 - - unknown [Medicago truncatula]
12 Hb_002368_060 0.0746154241 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001028_040 0.0748460488 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
14 Hb_001292_030 0.0753561676 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
15 Hb_007044_270 0.0819670759 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
16 Hb_000098_040 0.0824636724 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
17 Hb_001322_120 0.0830955223 - - nutrient reservoir, putative [Ricinus communis]
18 Hb_001699_140 0.0834172428 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
19 Hb_000139_310 0.083590181 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
20 Hb_001006_040 0.0850116709 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000077_380 Hb_000077_380 Hb_005063_030 Hb_005063_030 Hb_000077_380--Hb_005063_030 Hb_000101_330 Hb_000101_330 Hb_000077_380--Hb_000101_330 Hb_006570_030 Hb_006570_030 Hb_000077_380--Hb_006570_030 Hb_001975_100 Hb_001975_100 Hb_000077_380--Hb_001975_100 Hb_001564_120 Hb_001564_120 Hb_000077_380--Hb_001564_120 Hb_002852_010 Hb_002852_010 Hb_000077_380--Hb_002852_010 Hb_005063_030--Hb_001975_100 Hb_005063_030--Hb_001564_120 Hb_000254_130 Hb_000254_130 Hb_005063_030--Hb_000254_130 Hb_005063_030--Hb_000101_330 Hb_001292_030 Hb_001292_030 Hb_005063_030--Hb_001292_030 Hb_001999_230 Hb_001999_230 Hb_005063_030--Hb_001999_230 Hb_007477_060 Hb_007477_060 Hb_000101_330--Hb_007477_060 Hb_000101_330--Hb_006570_030 Hb_001028_040 Hb_001028_040 Hb_000101_330--Hb_001028_040 Hb_001699_140 Hb_001699_140 Hb_000101_330--Hb_001699_140 Hb_002368_060 Hb_002368_060 Hb_000101_330--Hb_002368_060 Hb_000139_310 Hb_000139_310 Hb_006570_030--Hb_000139_310 Hb_006570_030--Hb_002368_060 Hb_006570_030--Hb_001028_040 Hb_001322_120 Hb_001322_120 Hb_006570_030--Hb_001322_120 Hb_006570_030--Hb_001292_030 Hb_001416_130 Hb_001416_130 Hb_006570_030--Hb_001416_130 Hb_001975_100--Hb_000254_130 Hb_001006_040 Hb_001006_040 Hb_001975_100--Hb_001006_040 Hb_001975_100--Hb_001292_030 Hb_001975_100--Hb_001564_120 Hb_008225_050 Hb_008225_050 Hb_001975_100--Hb_008225_050 Hb_000098_040 Hb_000098_040 Hb_001564_120--Hb_000098_040 Hb_001564_120--Hb_001999_230 Hb_000099_120 Hb_000099_120 Hb_001564_120--Hb_000099_120 Hb_001007_070 Hb_001007_070 Hb_001564_120--Hb_001007_070 Hb_005054_120 Hb_005054_120 Hb_002852_010--Hb_005054_120 Hb_002259_090 Hb_002259_090 Hb_002852_010--Hb_002259_090 Hb_003494_090 Hb_003494_090 Hb_002852_010--Hb_003494_090 Hb_002852_010--Hb_001699_140 Hb_002852_010--Hb_005063_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.168205 12.2789 87.011 40.4866 1.00233 0.168268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.147646 0.11616 0.393548 1.23255 171.713

CAGE analysis