Hb_002852_010

Information

Type -
Description -
Location Contig2852: 3412-6174
Sequence    

Annotation

kegg
ID rcu:RCOM_1113060
description leucine-rich repeat receptor protein kinase exs precursor, putative (EC:1.3.1.74)
nr
ID XP_002531725.1
description leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
swissprot
ID Q8S7M7
description Plant intracellular Ras-group-related LRR protein 5 OS=Oryza sativa subsp. japonica GN=IRL5 PE=2 SV=1
trembl
ID B9T0F6
description Leucine-rich repeat receptor protein kinase exs, putative OS=Ricinus communis GN=RCOM_1113060 PE=4 SV=1
Gene Ontology
ID GO:0005515
description disease resistance family protein lrr family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002852_010 0.0 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
2 Hb_005054_120 0.04895842 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
3 Hb_000077_380 0.0702932475 - - PREDICTED: protochlorophyllide reductase [Jatropha curcas]
4 Hb_002259_090 0.0712525454 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
5 Hb_003494_090 0.0727061551 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
6 Hb_001699_140 0.0736477206 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
7 Hb_005063_030 0.0752867895 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
8 Hb_000460_040 0.0765133869 - - PREDICTED: protein phosphatase 2C 57 [Jatropha curcas]
9 Hb_001007_070 0.0769351482 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
10 Hb_000254_130 0.0774431497 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
11 Hb_003025_160 0.0781862372 - - Protein HVA22, putative [Ricinus communis]
12 Hb_001975_100 0.081367798 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
13 Hb_000101_330 0.0822455247 - - -
14 Hb_025557_060 0.0838694415 transcription factor TF Family: MYB Myb-related protein 306, putative isoform 1 [Theobroma cacao]
15 Hb_002368_060 0.0841874873 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001999_230 0.085806078 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
17 Hb_001028_040 0.0871342277 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
18 Hb_033363_040 0.0873003709 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
19 Hb_002007_220 0.0886932524 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
20 Hb_119600_030 0.089781504 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]

Gene co-expression network

sample Hb_002852_010 Hb_002852_010 Hb_005054_120 Hb_005054_120 Hb_002852_010--Hb_005054_120 Hb_000077_380 Hb_000077_380 Hb_002852_010--Hb_000077_380 Hb_002259_090 Hb_002259_090 Hb_002852_010--Hb_002259_090 Hb_003494_090 Hb_003494_090 Hb_002852_010--Hb_003494_090 Hb_001699_140 Hb_001699_140 Hb_002852_010--Hb_001699_140 Hb_005063_030 Hb_005063_030 Hb_002852_010--Hb_005063_030 Hb_001007_070 Hb_001007_070 Hb_005054_120--Hb_001007_070 Hb_005054_120--Hb_005063_030 Hb_001564_120 Hb_001564_120 Hb_005054_120--Hb_001564_120 Hb_005054_120--Hb_002259_090 Hb_001999_230 Hb_001999_230 Hb_005054_120--Hb_001999_230 Hb_000077_380--Hb_005063_030 Hb_000101_330 Hb_000101_330 Hb_000077_380--Hb_000101_330 Hb_006570_030 Hb_006570_030 Hb_000077_380--Hb_006570_030 Hb_001975_100 Hb_001975_100 Hb_000077_380--Hb_001975_100 Hb_000077_380--Hb_001564_120 Hb_008847_050 Hb_008847_050 Hb_002259_090--Hb_008847_050 Hb_002259_090--Hb_001007_070 Hb_003025_160 Hb_003025_160 Hb_002259_090--Hb_003025_160 Hb_002259_090--Hb_001999_230 Hb_001277_130 Hb_001277_130 Hb_002259_090--Hb_001277_130 Hb_002007_220 Hb_002007_220 Hb_003494_090--Hb_002007_220 Hb_000460_040 Hb_000460_040 Hb_003494_090--Hb_000460_040 Hb_005329_010 Hb_005329_010 Hb_003494_090--Hb_005329_010 Hb_033363_040 Hb_033363_040 Hb_003494_090--Hb_033363_040 Hb_018591_020 Hb_018591_020 Hb_003494_090--Hb_018591_020 Hb_001699_140--Hb_000101_330 Hb_007477_060 Hb_007477_060 Hb_001699_140--Hb_007477_060 Hb_005305_070 Hb_005305_070 Hb_001699_140--Hb_005305_070 Hb_000270_090 Hb_000270_090 Hb_001699_140--Hb_000270_090 Hb_001699_140--Hb_005054_120 Hb_001699_140--Hb_000460_040 Hb_005063_030--Hb_001975_100 Hb_005063_030--Hb_001564_120 Hb_000254_130 Hb_000254_130 Hb_005063_030--Hb_000254_130 Hb_005063_030--Hb_000101_330 Hb_001292_030 Hb_001292_030 Hb_005063_030--Hb_001292_030 Hb_005063_030--Hb_001999_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00883027 0.494062 2.22365 1.33041 0.00884125 0.00839475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.025088 4.21443

CAGE analysis