Hb_005329_010

Information

Type -
Description -
Location Contig5329: 299-3939
Sequence    

Annotation

kegg
ID rcu:RCOM_0906850
description Negative regulator of the PHO system, putative (EC:2.7.10.2)
nr
ID XP_012091447.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
swissprot
ID Q9ZT07
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3
trembl
ID A0A067JDL1
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_21314 PE=3 SV=1
Gene Ontology
ID GO:0016301
description g-type lectin s-receptor-like serine threonine-protein kinase at1g11410

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47431: 311-4112
cDNA
(Sanger)
(ID:Location)		 040_K16.ab1: 311-1065

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005329_010 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
2 Hb_005211_080 0.0511226133 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
3 Hb_001766_160 0.0585911333 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
4 Hb_000088_230 0.0595619863 - - hypothetical protein POPTR_0013s11340g [Populus trichocarpa]
5 Hb_001006_150 0.0615367626 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
6 Hb_001322_120 0.0624130066 - - nutrient reservoir, putative [Ricinus communis]
7 Hb_000460_040 0.064589262 - - PREDICTED: protein phosphatase 2C 57 [Jatropha curcas]
8 Hb_000445_270 0.0650260866 - - ATP binding protein, putative [Ricinus communis]
9 Hb_001338_120 0.0663987388 - - hypothetical chloroplast RF68 (chloroplast) [Ipomoea batatas]
10 Hb_004306_090 0.066583253 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
11 Hb_000359_050 0.0674686725 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
12 Hb_007477_060 0.0675964995 - - unknown [Medicago truncatula]
13 Hb_000962_090 0.0698126553 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
14 Hb_002871_180 0.0731561391 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
15 Hb_001159_050 0.0764507942 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
16 Hb_003494_090 0.0785020423 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
17 Hb_080922_010 0.0787124799 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
18 Hb_002272_210 0.0794929032 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
19 Hb_005649_060 0.0806385045 - - PREDICTED: uncharacterized protein LOC105644161 [Jatropha curcas]
20 Hb_001292_030 0.0817619254 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_005329_010 Hb_005329_010 Hb_005211_080 Hb_005211_080 Hb_005329_010--Hb_005211_080 Hb_001766_160 Hb_001766_160 Hb_005329_010--Hb_001766_160 Hb_000088_230 Hb_000088_230 Hb_005329_010--Hb_000088_230 Hb_001006_150 Hb_001006_150 Hb_005329_010--Hb_001006_150 Hb_001322_120 Hb_001322_120 Hb_005329_010--Hb_001322_120 Hb_000460_040 Hb_000460_040 Hb_005329_010--Hb_000460_040 Hb_000962_090 Hb_000962_090 Hb_005211_080--Hb_000962_090 Hb_000359_050 Hb_000359_050 Hb_005211_080--Hb_000359_050 Hb_005211_080--Hb_001006_150 Hb_004306_090 Hb_004306_090 Hb_005211_080--Hb_004306_090 Hb_005211_080--Hb_001766_160 Hb_001766_160--Hb_001322_120 Hb_005649_060 Hb_005649_060 Hb_001766_160--Hb_005649_060 Hb_007477_060 Hb_007477_060 Hb_001766_160--Hb_007477_060 Hb_000531_100 Hb_000531_100 Hb_001766_160--Hb_000531_100 Hb_002871_180 Hb_002871_180 Hb_001766_160--Hb_002871_180 Hb_001766_160--Hb_001006_150 Hb_000088_230--Hb_001322_120 Hb_000088_230--Hb_000460_040 Hb_000088_230--Hb_002871_180 Hb_002529_120 Hb_002529_120 Hb_000088_230--Hb_002529_120 Hb_000088_230--Hb_001006_150 Hb_001006_150--Hb_000359_050 Hb_000445_270 Hb_000445_270 Hb_001006_150--Hb_000445_270 Hb_000340_280 Hb_000340_280 Hb_001006_150--Hb_000340_280 Hb_001338_120 Hb_001338_120 Hb_001006_150--Hb_001338_120 Hb_001292_030 Hb_001292_030 Hb_001322_120--Hb_001292_030 Hb_002785_030 Hb_002785_030 Hb_001322_120--Hb_002785_030 Hb_006570_030 Hb_006570_030 Hb_001322_120--Hb_006570_030 Hb_001322_120--Hb_002529_120 Hb_001006_040 Hb_001006_040 Hb_001322_120--Hb_001006_040 Hb_001699_140 Hb_001699_140 Hb_000460_040--Hb_001699_140 Hb_000460_040--Hb_007477_060 Hb_003494_090 Hb_003494_090 Hb_000460_040--Hb_003494_090 Hb_000460_040--Hb_005211_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0283679 1.07418 8.76238 2.64476 0 0.0255953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0169045 0 0.154619 10.8386

CAGE analysis