Hb_000482_180

Information

Type -
Description -
Location Contig482: 277068-284524
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24570g
description POPTRDRAFT_832093; P-protein subunit of glycine decarboxylase enzyme complex
nr
ID XP_012077290.1
description PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
swissprot
ID O49954
description Glycine dehydrogenase (decarboxylating), mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1
trembl
ID A0A067KD00
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07672 PE=3 SV=1
Gene Ontology
ID GO:0004375
description glycine dehydrogenase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44791: 277110-284464 , PASA_asmbl_44792: 278988-279345
cDNA
(Sanger)
(ID:Location)		 006_F07.ab1: 282435-283638

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000482_180 0.0 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
2 Hb_005111_040 0.0551571577 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
3 Hb_048755_030 0.0648803827 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
4 Hb_002701_250 0.0775492254 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
5 Hb_007904_110 0.0811709355 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
6 Hb_006291_050 0.0851874646 - - PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_005305_070 0.0854270852 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
8 Hb_000483_440 0.089520379 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004979_070 0.0905624649 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
10 Hb_002534_090 0.0906366157 - - geranylgeranyl reductase [Hevea brasiliensis]
11 Hb_004052_030 0.0909251148 - - PREDICTED: uncharacterized protein LOC105640637 [Jatropha curcas]
12 Hb_001564_120 0.0926697053 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
13 Hb_002042_210 0.0934340029 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
14 Hb_004291_030 0.0957177873 - - PREDICTED: MATE efflux family protein 9-like [Jatropha curcas]
15 Hb_000017_210 0.0958497964 - - PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
16 Hb_020367_040 0.0961742611 - - hypothetical protein JCGZ_01061 [Jatropha curcas]
17 Hb_011537_130 0.0969704757 - - unnamed protein product [Vitis vinifera]
18 Hb_000081_110 0.0971226403 - - nitrate transporter, putative [Ricinus communis]
19 Hb_004128_170 0.0978482972 - - hypothetical protein POPTR_0016s08350g [Populus trichocarpa]
20 Hb_000906_080 0.0978590705 - - short chain alcohol dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000482_180 Hb_000482_180 Hb_005111_040 Hb_005111_040 Hb_000482_180--Hb_005111_040 Hb_048755_030 Hb_048755_030 Hb_000482_180--Hb_048755_030 Hb_002701_250 Hb_002701_250 Hb_000482_180--Hb_002701_250 Hb_007904_110 Hb_007904_110 Hb_000482_180--Hb_007904_110 Hb_006291_050 Hb_006291_050 Hb_000482_180--Hb_006291_050 Hb_005305_070 Hb_005305_070 Hb_000482_180--Hb_005305_070 Hb_005111_040--Hb_006291_050 Hb_001007_070 Hb_001007_070 Hb_005111_040--Hb_001007_070 Hb_009193_070 Hb_009193_070 Hb_005111_040--Hb_009193_070 Hb_131466_010 Hb_131466_010 Hb_005111_040--Hb_131466_010 Hb_044478_010 Hb_044478_010 Hb_005111_040--Hb_044478_010 Hb_011537_130 Hb_011537_130 Hb_048755_030--Hb_011537_130 Hb_001579_050 Hb_001579_050 Hb_048755_030--Hb_001579_050 Hb_002111_010 Hb_002111_010 Hb_048755_030--Hb_002111_010 Hb_000139_030 Hb_000139_030 Hb_048755_030--Hb_000139_030 Hb_020367_040 Hb_020367_040 Hb_048755_030--Hb_020367_040 Hb_000826_010 Hb_000826_010 Hb_002701_250--Hb_000826_010 Hb_002289_070 Hb_002289_070 Hb_002701_250--Hb_002289_070 Hb_000373_160 Hb_000373_160 Hb_002701_250--Hb_000373_160 Hb_002701_250--Hb_020367_040 Hb_000098_040 Hb_000098_040 Hb_002701_250--Hb_000098_040 Hb_004979_070 Hb_004979_070 Hb_007904_110--Hb_004979_070 Hb_096224_050 Hb_096224_050 Hb_007904_110--Hb_096224_050 Hb_007904_110--Hb_005305_070 Hb_119600_030 Hb_119600_030 Hb_007904_110--Hb_119600_030 Hb_025557_060 Hb_025557_060 Hb_007904_110--Hb_025557_060 Hb_004979_080 Hb_004979_080 Hb_007904_110--Hb_004979_080 Hb_006291_050--Hb_131466_010 Hb_006291_050--Hb_009193_070 Hb_002042_210 Hb_002042_210 Hb_006291_050--Hb_002042_210 Hb_006573_240 Hb_006573_240 Hb_006291_050--Hb_006573_240 Hb_006291_050--Hb_044478_010 Hb_001699_140 Hb_001699_140 Hb_005305_070--Hb_001699_140 Hb_000017_210 Hb_000017_210 Hb_005305_070--Hb_000017_210 Hb_000906_080 Hb_000906_080 Hb_005305_070--Hb_000906_080 Hb_000483_440 Hb_000483_440 Hb_005305_070--Hb_000483_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.190336 48.3136 214.929 176.509 0.242864 0.114602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.364217 0.394109 0.395426 27.2977 683.01

CAGE analysis