Hb_002111_010

Information

Type -
Description -
Location Contig2111: 1077-4082
Sequence    

Annotation

kegg
ID pop:POPTR_0006s06000g
description hypothetical protein
nr
ID XP_012081236.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID A0A067LGY2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04542 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21885: 3299-3403
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002111_010 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
2 Hb_000441_080 0.0425816304 - - calmodulin binding protein, putative [Ricinus communis]
3 Hb_077151_010 0.0645263868 - - ankyrin repeat protein [Bruguiera gymnorhiza]
4 Hb_000011_440 0.0909676139 - - PREDICTED: GDSL esterase/lipase 1 [Populus euphratica]
5 Hb_048755_030 0.0910168979 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
6 Hb_001579_050 0.0972063884 - - alcohol dehydrogenase, putative [Ricinus communis]
7 Hb_000139_030 0.0983379612 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
8 Hb_000199_090 0.0990068256 - - Tetrapyrrole-binding family protein [Populus trichocarpa]
9 Hb_014510_030 0.1031406282 - - hypothetical protein VITISV_027576 [Vitis vinifera]
10 Hb_003073_030 0.1043500964 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000081_110 0.1069697695 - - nitrate transporter, putative [Ricinus communis]
12 Hb_168319_040 0.1115070039 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
13 Hb_000483_440 0.1137956213 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002943_020 0.1151563053 - - hypothetical protein POPTR_0075s00240g, partial [Populus trichocarpa]
15 Hb_004242_200 0.1180263357 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
16 Hb_114893_010 0.1187703034 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
17 Hb_004146_030 0.1201308798 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_000462_160 0.1212564663 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_005678_030 0.122069017 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
20 Hb_163950_040 0.1256433495 - - PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002111_010 Hb_002111_010 Hb_000441_080 Hb_000441_080 Hb_002111_010--Hb_000441_080 Hb_077151_010 Hb_077151_010 Hb_002111_010--Hb_077151_010 Hb_000011_440 Hb_000011_440 Hb_002111_010--Hb_000011_440 Hb_048755_030 Hb_048755_030 Hb_002111_010--Hb_048755_030 Hb_001579_050 Hb_001579_050 Hb_002111_010--Hb_001579_050 Hb_000139_030 Hb_000139_030 Hb_002111_010--Hb_000139_030 Hb_000441_080--Hb_077151_010 Hb_168319_040 Hb_168319_040 Hb_000441_080--Hb_168319_040 Hb_000441_080--Hb_000139_030 Hb_000441_080--Hb_000011_440 Hb_000081_110 Hb_000081_110 Hb_000441_080--Hb_000081_110 Hb_005678_030 Hb_005678_030 Hb_077151_010--Hb_005678_030 Hb_003073_030 Hb_003073_030 Hb_077151_010--Hb_003073_030 Hb_015807_020 Hb_015807_020 Hb_077151_010--Hb_015807_020 Hb_077151_010--Hb_001579_050 Hb_000092_060 Hb_000092_060 Hb_000011_440--Hb_000092_060 Hb_004291_050 Hb_004291_050 Hb_000011_440--Hb_004291_050 Hb_001300_160 Hb_001300_160 Hb_000011_440--Hb_001300_160 Hb_000483_440 Hb_000483_440 Hb_000011_440--Hb_000483_440 Hb_000482_180 Hb_000482_180 Hb_048755_030--Hb_000482_180 Hb_011537_130 Hb_011537_130 Hb_048755_030--Hb_011537_130 Hb_048755_030--Hb_001579_050 Hb_048755_030--Hb_000139_030 Hb_020367_040 Hb_020367_040 Hb_048755_030--Hb_020367_040 Hb_001517_060 Hb_001517_060 Hb_001579_050--Hb_001517_060 Hb_001579_050--Hb_015807_020 Hb_001289_050 Hb_001289_050 Hb_001579_050--Hb_001289_050 Hb_001579_050--Hb_000139_030 Hb_001579_050--Hb_000081_110 Hb_002534_090 Hb_002534_090 Hb_001579_050--Hb_002534_090 Hb_000139_030--Hb_000081_110 Hb_057880_020 Hb_057880_020 Hb_000139_030--Hb_057880_020 Hb_000462_160 Hb_000462_160 Hb_000139_030--Hb_000462_160 Hb_000139_030--Hb_020367_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.238674 0.617839 0.472226 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.326481 3.10748

CAGE analysis