Hb_003073_030

Information

Type -
Description -
Location Contig3073: 8997-17970
Sequence    

Annotation

kegg
ID rcu:RCOM_1206790
description hypothetical protein
nr
ID XP_002530845.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B9SXY8
description CASP-like protein 4D1 OS=Ricinus communis GN=RCOM_1206790 PE=3 SV=1
trembl
ID A0A078F1R7
description CASP-like protein OS=Brassica napus GN=BnaA04g22980D PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 4d1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32450: 17097-18014
cDNA
(Sanger)
(ID:Location)		 024_E17.ab1: 17097-18007

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003073_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_040245_010 0.0524920299 - - hypothetical protein CISIN_1g039575mg, partial [Citrus sinensis]
3 Hb_014510_030 0.0662220197 - - hypothetical protein VITISV_027576 [Vitis vinifera]
4 Hb_000415_080 0.0755718534 - - -
5 Hb_000199_090 0.0775253158 - - Tetrapyrrole-binding family protein [Populus trichocarpa]
6 Hb_077151_010 0.0803012303 - - ankyrin repeat protein [Bruguiera gymnorhiza]
7 Hb_000627_110 0.0942292594 - - cellulose synthase, putative [Ricinus communis]
8 Hb_032016_010 0.098337873 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
9 Hb_002111_010 0.1043500964 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
10 Hb_004896_030 0.1137373075 - - hypothetical protein VITISV_007475 [Vitis vinifera]
11 Hb_001856_290 0.1173173948 - - hypothetical protein JCGZ_16255 [Jatropha curcas]
12 Hb_054865_040 0.1213568972 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
13 Hb_000644_020 0.1224596265 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
14 Hb_005678_030 0.1247692575 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
15 Hb_009851_090 0.1264381618 - - Protein ABIL2, putative [Ricinus communis]
16 Hb_000441_080 0.1287377654 - - calmodulin binding protein, putative [Ricinus communis]
17 Hb_102761_010 0.1332487945 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
18 Hb_005092_070 0.1390507257 - - Oligopeptide transporter, putative [Ricinus communis]
19 Hb_114893_010 0.1405915467 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
20 Hb_015807_020 0.1406783823 - - gibberellin 20-oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003073_030 Hb_003073_030 Hb_040245_010 Hb_040245_010 Hb_003073_030--Hb_040245_010 Hb_014510_030 Hb_014510_030 Hb_003073_030--Hb_014510_030 Hb_000415_080 Hb_000415_080 Hb_003073_030--Hb_000415_080 Hb_000199_090 Hb_000199_090 Hb_003073_030--Hb_000199_090 Hb_077151_010 Hb_077151_010 Hb_003073_030--Hb_077151_010 Hb_000627_110 Hb_000627_110 Hb_003073_030--Hb_000627_110 Hb_040245_010--Hb_000415_080 Hb_040245_010--Hb_014510_030 Hb_040245_010--Hb_000199_090 Hb_040245_010--Hb_000627_110 Hb_032016_010 Hb_032016_010 Hb_040245_010--Hb_032016_010 Hb_014510_030--Hb_000199_090 Hb_014510_030--Hb_000627_110 Hb_004896_030 Hb_004896_030 Hb_014510_030--Hb_004896_030 Hb_014510_030--Hb_000415_080 Hb_000415_080--Hb_000627_110 Hb_000415_080--Hb_000199_090 Hb_102761_010 Hb_102761_010 Hb_000415_080--Hb_102761_010 Hb_000199_090--Hb_000627_110 Hb_000199_090--Hb_004896_030 Hb_114893_010 Hb_114893_010 Hb_000199_090--Hb_114893_010 Hb_002111_010 Hb_002111_010 Hb_077151_010--Hb_002111_010 Hb_005678_030 Hb_005678_030 Hb_077151_010--Hb_005678_030 Hb_000441_080 Hb_000441_080 Hb_077151_010--Hb_000441_080 Hb_015807_020 Hb_015807_020 Hb_077151_010--Hb_015807_020 Hb_001579_050 Hb_001579_050 Hb_077151_010--Hb_001579_050 Hb_000627_110--Hb_004896_030 Hb_029386_010 Hb_029386_010 Hb_000627_110--Hb_029386_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0133427 0.185621 0.580532 0.851447 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.696437 5.15687

CAGE analysis