Hb_014510_030

Information

Type -
Description -
Location Contig14510: 34510-36099
Sequence    

Annotation

kegg
ID brp:103868780
description uncharacterized LOC103868780
nr
ID CAN83506.1
description hypothetical protein VITISV_027576 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5BRC3
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027576 PE=4 SV=1
Gene Ontology
ID GO:0097159
description retrovirus-related pol polyprotein from transposon tnt 1-94

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014510_030 0.0 - - hypothetical protein VITISV_027576 [Vitis vinifera]
2 Hb_000199_090 0.0549308062 - - Tetrapyrrole-binding family protein [Populus trichocarpa]
3 Hb_000627_110 0.055189496 - - cellulose synthase, putative [Ricinus communis]
4 Hb_003073_030 0.0662220197 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004896_030 0.0679321224 - - hypothetical protein VITISV_007475 [Vitis vinifera]
6 Hb_040245_010 0.0747605418 - - hypothetical protein CISIN_1g039575mg, partial [Citrus sinensis]
7 Hb_000415_080 0.0802543279 - - -
8 Hb_102761_010 0.0980517568 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
9 Hb_002111_010 0.1031406282 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
10 Hb_077151_010 0.1072370938 - - ankyrin repeat protein [Bruguiera gymnorhiza]
11 Hb_114893_010 0.1130225798 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
12 Hb_048755_030 0.1146922324 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
13 Hb_003358_030 0.1220547595 - - ankyrin-kinase, putative [Ricinus communis]
14 Hb_002740_060 0.1249845699 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
15 Hb_029386_010 0.1281582198 - - RALF-LIKE 27 family protein [Populus trichocarpa]
16 Hb_000462_160 0.1342709401 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_005092_070 0.1377288966 - - Oligopeptide transporter, putative [Ricinus communis]
18 Hb_000441_080 0.137897347 - - calmodulin binding protein, putative [Ricinus communis]
19 Hb_032016_010 0.138158038 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
20 Hb_054865_040 0.1385718269 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]

Gene co-expression network

sample Hb_014510_030 Hb_014510_030 Hb_000199_090 Hb_000199_090 Hb_014510_030--Hb_000199_090 Hb_000627_110 Hb_000627_110 Hb_014510_030--Hb_000627_110 Hb_003073_030 Hb_003073_030 Hb_014510_030--Hb_003073_030 Hb_004896_030 Hb_004896_030 Hb_014510_030--Hb_004896_030 Hb_040245_010 Hb_040245_010 Hb_014510_030--Hb_040245_010 Hb_000415_080 Hb_000415_080 Hb_014510_030--Hb_000415_080 Hb_000199_090--Hb_000627_110 Hb_000199_090--Hb_004896_030 Hb_000199_090--Hb_003073_030 Hb_000199_090--Hb_040245_010 Hb_114893_010 Hb_114893_010 Hb_000199_090--Hb_114893_010 Hb_000627_110--Hb_004896_030 Hb_000627_110--Hb_000415_080 Hb_000627_110--Hb_040245_010 Hb_029386_010 Hb_029386_010 Hb_000627_110--Hb_029386_010 Hb_003073_030--Hb_040245_010 Hb_003073_030--Hb_000415_080 Hb_077151_010 Hb_077151_010 Hb_003073_030--Hb_077151_010 Hb_003073_030--Hb_000627_110 Hb_002740_060 Hb_002740_060 Hb_004896_030--Hb_002740_060 Hb_004896_030--Hb_114893_010 Hb_004896_030--Hb_029386_010 Hb_040245_010--Hb_000415_080 Hb_032016_010 Hb_032016_010 Hb_040245_010--Hb_032016_010 Hb_000415_080--Hb_000199_090 Hb_102761_010 Hb_102761_010 Hb_000415_080--Hb_102761_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0840988 0.307146 0.524624 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.280461 2.17154

CAGE analysis