Hb_000415_080

Information

Type -
Description -
Location Contig415: 146615-150598
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41094: 146354-146624
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000415_080 0.0 - - -
2 Hb_040245_010 0.0463543408 - - hypothetical protein CISIN_1g039575mg, partial [Citrus sinensis]
3 Hb_003073_030 0.0755718534 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000627_110 0.0783206437 - - cellulose synthase, putative [Ricinus communis]
5 Hb_014510_030 0.0802543279 - - hypothetical protein VITISV_027576 [Vitis vinifera]
6 Hb_000199_090 0.0944603602 - - Tetrapyrrole-binding family protein [Populus trichocarpa]
7 Hb_102761_010 0.100223461 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
8 Hb_004896_030 0.1058558494 - - hypothetical protein VITISV_007475 [Vitis vinifera]
9 Hb_005092_070 0.1153981422 - - Oligopeptide transporter, putative [Ricinus communis]
10 Hb_054865_040 0.1158275844 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
11 Hb_032016_010 0.1177259019 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
12 Hb_094484_010 0.1229033784 - - kinase, putative [Ricinus communis]
13 Hb_001856_290 0.1273336571 - - hypothetical protein JCGZ_16255 [Jatropha curcas]
14 Hb_077151_010 0.1315901175 - - ankyrin repeat protein [Bruguiera gymnorhiza]
15 Hb_009851_090 0.1421519082 - - Protein ABIL2, putative [Ricinus communis]
16 Hb_000644_020 0.1440156082 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
17 Hb_002188_150 0.1445863244 - - conserved hypothetical protein [Ricinus communis]
18 Hb_029386_010 0.1472161148 - - RALF-LIKE 27 family protein [Populus trichocarpa]
19 Hb_003253_030 0.1474016033 - - lysosomal pro-X carboxypeptidase, putative [Ricinus communis]
20 Hb_000997_370 0.1482638527 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_000415_080 Hb_000415_080 Hb_040245_010 Hb_040245_010 Hb_000415_080--Hb_040245_010 Hb_003073_030 Hb_003073_030 Hb_000415_080--Hb_003073_030 Hb_000627_110 Hb_000627_110 Hb_000415_080--Hb_000627_110 Hb_014510_030 Hb_014510_030 Hb_000415_080--Hb_014510_030 Hb_000199_090 Hb_000199_090 Hb_000415_080--Hb_000199_090 Hb_102761_010 Hb_102761_010 Hb_000415_080--Hb_102761_010 Hb_040245_010--Hb_003073_030 Hb_040245_010--Hb_014510_030 Hb_040245_010--Hb_000199_090 Hb_040245_010--Hb_000627_110 Hb_032016_010 Hb_032016_010 Hb_040245_010--Hb_032016_010 Hb_003073_030--Hb_014510_030 Hb_003073_030--Hb_000199_090 Hb_077151_010 Hb_077151_010 Hb_003073_030--Hb_077151_010 Hb_003073_030--Hb_000627_110 Hb_000627_110--Hb_000199_090 Hb_004896_030 Hb_004896_030 Hb_000627_110--Hb_004896_030 Hb_000627_110--Hb_014510_030 Hb_029386_010 Hb_029386_010 Hb_000627_110--Hb_029386_010 Hb_014510_030--Hb_000199_090 Hb_014510_030--Hb_004896_030 Hb_000199_090--Hb_004896_030 Hb_114893_010 Hb_114893_010 Hb_000199_090--Hb_114893_010 Hb_004530_010 Hb_004530_010 Hb_102761_010--Hb_004530_010 Hb_102761_010--Hb_014510_030 Hb_102761_010--Hb_004896_030 Hb_010721_040 Hb_010721_040 Hb_102761_010--Hb_010721_040 Hb_102761_010--Hb_000627_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00843472 0.187523 0.826898 2.01043 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0154598 0.0364966 0 1.15846 9.5152

CAGE analysis