Hb_004896_030

Information

Type -
Description -
Location Contig4896: 46316-47609
Sequence    

Annotation

kegg
ID sot:102601269
description uncharacterized LOC102601269
nr
ID CAN72533.1
description hypothetical protein VITISV_007475 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BNW1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007475 PE=4 SV=1
Gene Ontology
ID GO:0003676
description polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004896_030 0.0 - - hypothetical protein VITISV_007475 [Vitis vinifera]
2 Hb_000627_110 0.050005912 - - cellulose synthase, putative [Ricinus communis]
3 Hb_002740_060 0.0667878824 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
4 Hb_000199_090 0.0675079902 - - Tetrapyrrole-binding family protein [Populus trichocarpa]
5 Hb_014510_030 0.0679321224 - - hypothetical protein VITISV_027576 [Vitis vinifera]
6 Hb_114893_010 0.0962655015 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
7 Hb_029386_010 0.0988467988 - - RALF-LIKE 27 family protein [Populus trichocarpa]
8 Hb_102761_010 0.1008631078 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
9 Hb_000415_080 0.1058558494 - - -
10 Hb_000223_090 0.1062111015 - - Blue copper protein precursor, putative [Ricinus communis]
11 Hb_003073_030 0.1137373075 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000907_130 0.1138546398 - - -
13 Hb_003358_030 0.1141704294 - - ankyrin-kinase, putative [Ricinus communis]
14 Hb_040245_010 0.1145635664 - - hypothetical protein CISIN_1g039575mg, partial [Citrus sinensis]
15 Hb_000265_030 0.1181583867 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
16 Hb_005622_040 0.1192963433 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
17 Hb_097783_030 0.1204135809 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
18 Hb_010381_080 0.1211125271 - - cytochrome P450, putative [Ricinus communis]
19 Hb_005348_050 0.1217640985 - - beta-galactosidase, putative [Ricinus communis]
20 Hb_128750_010 0.1234466421 - - PREDICTED: receptor-like protein 12 [Populus euphratica]

Gene co-expression network

sample Hb_004896_030 Hb_004896_030 Hb_000627_110 Hb_000627_110 Hb_004896_030--Hb_000627_110 Hb_002740_060 Hb_002740_060 Hb_004896_030--Hb_002740_060 Hb_000199_090 Hb_000199_090 Hb_004896_030--Hb_000199_090 Hb_014510_030 Hb_014510_030 Hb_004896_030--Hb_014510_030 Hb_114893_010 Hb_114893_010 Hb_004896_030--Hb_114893_010 Hb_029386_010 Hb_029386_010 Hb_004896_030--Hb_029386_010 Hb_000627_110--Hb_000199_090 Hb_000627_110--Hb_014510_030 Hb_000415_080 Hb_000415_080 Hb_000627_110--Hb_000415_080 Hb_040245_010 Hb_040245_010 Hb_000627_110--Hb_040245_010 Hb_000627_110--Hb_029386_010 Hb_000265_030 Hb_000265_030 Hb_002740_060--Hb_000265_030 Hb_005622_040 Hb_005622_040 Hb_002740_060--Hb_005622_040 Hb_113379_010 Hb_113379_010 Hb_002740_060--Hb_113379_010 Hb_001384_040 Hb_001384_040 Hb_002740_060--Hb_001384_040 Hb_002740_060--Hb_000627_110 Hb_000199_090--Hb_014510_030 Hb_003073_030 Hb_003073_030 Hb_000199_090--Hb_003073_030 Hb_000199_090--Hb_040245_010 Hb_000199_090--Hb_114893_010 Hb_014510_030--Hb_003073_030 Hb_014510_030--Hb_040245_010 Hb_014510_030--Hb_000415_080 Hb_001300_240 Hb_001300_240 Hb_114893_010--Hb_001300_240 Hb_002122_070 Hb_002122_070 Hb_114893_010--Hb_002122_070 Hb_039435_020 Hb_039435_020 Hb_114893_010--Hb_039435_020 Hb_004242_200 Hb_004242_200 Hb_114893_010--Hb_004242_200 Hb_010381_080 Hb_010381_080 Hb_114893_010--Hb_010381_080 Hb_003358_030 Hb_003358_030 Hb_029386_010--Hb_003358_030 Hb_005539_150 Hb_005539_150 Hb_029386_010--Hb_005539_150 Hb_000477_090 Hb_000477_090 Hb_029386_010--Hb_000477_090 Hb_000223_090 Hb_000223_090 Hb_029386_010--Hb_000223_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0177466 0.229132 0.365071 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.178978 1.25488

CAGE analysis