Hb_002740_060

Information

Type -
Description -
Location Contig2740: 133881-137450
Sequence    

Annotation

kegg
ID rcu:RCOM_1436870
description pectin acetylesterase, putative
nr
ID XP_012088806.1
description PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
swissprot
ID Q9SFF6
description Pectin acetylesterase 12 OS=Arabidopsis thaliana GN=PAE12 PE=2 SV=1
trembl
ID A0A067JUW0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23157 PE=4 SV=1
Gene Ontology
ID GO:0052689
description protein notum homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28668: 133932-134450
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002740_060 0.0 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
2 Hb_004896_030 0.0667878824 - - hypothetical protein VITISV_007475 [Vitis vinifera]
3 Hb_000265_030 0.0826309427 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
4 Hb_005622_040 0.086689482 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
5 Hb_113379_010 0.0905607414 - - PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1 [Jatropha curcas]
6 Hb_001384_040 0.0911989947 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
7 Hb_000627_110 0.0919151011 - - cellulose synthase, putative [Ricinus communis]
8 Hb_029386_010 0.1014742706 - - RALF-LIKE 27 family protein [Populus trichocarpa]
9 Hb_005155_030 0.1015909579 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
10 Hb_097783_030 0.1034830167 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
11 Hb_008253_050 0.103787029 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
12 Hb_114893_010 0.1098742257 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
13 Hb_000223_090 0.1122179399 - - Blue copper protein precursor, putative [Ricinus communis]
14 Hb_128750_010 0.112382412 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
15 Hb_000907_130 0.1139798212 - - -
16 Hb_000199_090 0.1149919382 - - Tetrapyrrole-binding family protein [Populus trichocarpa]
17 Hb_005348_050 0.1197719786 - - beta-galactosidase, putative [Ricinus communis]
18 Hb_005539_150 0.1214029155 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 33 [Jatropha curcas]
19 Hb_002835_050 0.1225591488 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
20 Hb_001104_220 0.1233174067 - - PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]

Gene co-expression network

sample Hb_002740_060 Hb_002740_060 Hb_004896_030 Hb_004896_030 Hb_002740_060--Hb_004896_030 Hb_000265_030 Hb_000265_030 Hb_002740_060--Hb_000265_030 Hb_005622_040 Hb_005622_040 Hb_002740_060--Hb_005622_040 Hb_113379_010 Hb_113379_010 Hb_002740_060--Hb_113379_010 Hb_001384_040 Hb_001384_040 Hb_002740_060--Hb_001384_040 Hb_000627_110 Hb_000627_110 Hb_002740_060--Hb_000627_110 Hb_004896_030--Hb_000627_110 Hb_000199_090 Hb_000199_090 Hb_004896_030--Hb_000199_090 Hb_014510_030 Hb_014510_030 Hb_004896_030--Hb_014510_030 Hb_114893_010 Hb_114893_010 Hb_004896_030--Hb_114893_010 Hb_029386_010 Hb_029386_010 Hb_004896_030--Hb_029386_010 Hb_032143_010 Hb_032143_010 Hb_000265_030--Hb_032143_010 Hb_000265_030--Hb_005622_040 Hb_002245_060 Hb_002245_060 Hb_000265_030--Hb_002245_060 Hb_010264_010 Hb_010264_010 Hb_000265_030--Hb_010264_010 Hb_005539_150 Hb_005539_150 Hb_000265_030--Hb_005539_150 Hb_001104_220 Hb_001104_220 Hb_005622_040--Hb_001104_220 Hb_008253_050 Hb_008253_050 Hb_005622_040--Hb_008253_050 Hb_097783_030 Hb_097783_030 Hb_005622_040--Hb_097783_030 Hb_011501_020 Hb_011501_020 Hb_005622_040--Hb_011501_020 Hb_113379_010--Hb_001384_040 Hb_011618_010 Hb_011618_010 Hb_113379_010--Hb_011618_010 Hb_012539_080 Hb_012539_080 Hb_113379_010--Hb_012539_080 Hb_005155_030 Hb_005155_030 Hb_113379_010--Hb_005155_030 Hb_113379_010--Hb_114893_010 Hb_001384_040--Hb_011618_010 Hb_001384_040--Hb_008253_050 Hb_041139_010 Hb_041139_010 Hb_001384_040--Hb_041139_010 Hb_002001_030 Hb_002001_030 Hb_001384_040--Hb_002001_030 Hb_000627_110--Hb_000199_090 Hb_000627_110--Hb_014510_030 Hb_000415_080 Hb_000415_080 Hb_000627_110--Hb_000415_080 Hb_040245_010 Hb_040245_010 Hb_000627_110--Hb_040245_010 Hb_000627_110--Hb_029386_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.11773 4.18255 6.31597 0 0.0108385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0253053 0.0398203 0 2.91802 17.1964

CAGE analysis