Hb_005155_030

Information

Type -
Description -
Location Contig5155: 29300-31887
Sequence    

Annotation

kegg
ID pop:POPTR_0019s05320g
description POPTRDRAFT_573944; hypothetical protein
nr
ID XP_012090562.1
description PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067LBZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01203 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005155_030 0.0 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
2 Hb_097783_030 0.0534728349 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
3 Hb_002835_050 0.0544382888 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
4 Hb_000907_130 0.0662546837 - - -
5 Hb_003030_050 0.0915494613 - - -
6 Hb_113379_010 0.1008352074 - - PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1 [Jatropha curcas]
7 Hb_002740_060 0.1015909579 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
8 Hb_012539_080 0.1084500156 - - Polyprotein, putative [Solanum demissum]
9 Hb_005622_040 0.1158995814 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
10 Hb_119443_010 0.1228750477 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
11 Hb_114893_010 0.1257855892 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
12 Hb_001384_040 0.1262416436 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
13 Hb_004896_030 0.1287695895 - - hypothetical protein VITISV_007475 [Vitis vinifera]
14 Hb_006053_020 0.1335309251 - - CAP [Theobroma cacao]
15 Hb_004096_200 0.1356875744 - - PREDICTED: GDT1-like protein 5 [Eucalyptus grandis]
16 Hb_000445_160 0.1359799498 - - PREDICTED: probable calcium-binding protein CML44 [Jatropha curcas]
17 Hb_002122_070 0.1378247955 - - unnamed protein product [Vitis vinifera]
18 Hb_039435_020 0.1384649713 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
19 Hb_004392_030 0.1385636668 - - oxidoreductase family protein [Populus trichocarpa]
20 Hb_001104_220 0.1441368827 - - PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]

Gene co-expression network

sample Hb_005155_030 Hb_005155_030 Hb_097783_030 Hb_097783_030 Hb_005155_030--Hb_097783_030 Hb_002835_050 Hb_002835_050 Hb_005155_030--Hb_002835_050 Hb_000907_130 Hb_000907_130 Hb_005155_030--Hb_000907_130 Hb_003030_050 Hb_003030_050 Hb_005155_030--Hb_003030_050 Hb_113379_010 Hb_113379_010 Hb_005155_030--Hb_113379_010 Hb_002740_060 Hb_002740_060 Hb_005155_030--Hb_002740_060 Hb_097783_030--Hb_000907_130 Hb_097783_030--Hb_003030_050 Hb_097783_030--Hb_002835_050 Hb_005622_040 Hb_005622_040 Hb_097783_030--Hb_005622_040 Hb_097783_030--Hb_002740_060 Hb_002835_050--Hb_000907_130 Hb_002835_050--Hb_003030_050 Hb_012539_080 Hb_012539_080 Hb_002835_050--Hb_012539_080 Hb_004392_030 Hb_004392_030 Hb_002835_050--Hb_004392_030 Hb_000907_130--Hb_003030_050 Hb_000907_130--Hb_012539_080 Hb_043935_010 Hb_043935_010 Hb_000907_130--Hb_043935_010 Hb_110737_010 Hb_110737_010 Hb_003030_050--Hb_110737_010 Hb_001369_270 Hb_001369_270 Hb_003030_050--Hb_001369_270 Hb_001384_040 Hb_001384_040 Hb_113379_010--Hb_001384_040 Hb_113379_010--Hb_002740_060 Hb_011618_010 Hb_011618_010 Hb_113379_010--Hb_011618_010 Hb_113379_010--Hb_012539_080 Hb_114893_010 Hb_114893_010 Hb_113379_010--Hb_114893_010 Hb_004896_030 Hb_004896_030 Hb_002740_060--Hb_004896_030 Hb_000265_030 Hb_000265_030 Hb_002740_060--Hb_000265_030 Hb_002740_060--Hb_005622_040 Hb_002740_060--Hb_001384_040 Hb_000627_110 Hb_000627_110 Hb_002740_060--Hb_000627_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0494041 0.053604 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0477814 0.162123

CAGE analysis