Hb_001369_270

Information

Type -
Description -
Location Contig1369: 272776-273214
Sequence    

Annotation

kegg
ID rcu:RCOM_1500660
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002510967.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9FMF6
description Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1
trembl
ID B9R9U2
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1500660 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_270 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000226_110 0.1080839818 - - -
3 Hb_110737_010 0.1137953137 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
4 Hb_016835_020 0.114713969 - - unnamed protein product [Coffea canephora]
5 Hb_060152_010 0.1199597255 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
6 Hb_003858_080 0.122495841 - - Germin-like protein 2 [Theobroma cacao]
7 Hb_003030_050 0.1372143397 - - -
8 Hb_003861_090 0.1411914428 - - adenylsulfate kinase, putative [Ricinus communis]
9 Hb_001109_170 0.1435554333 - - PREDICTED: urea-proton symporter DUR3 isoform X2 [Jatropha curcas]
10 Hb_181463_020 0.1438352776 - - hypothetical protein JCGZ_26765 [Jatropha curcas]
11 Hb_097783_030 0.1464260664 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
12 Hb_000237_120 0.1488246753 - - PREDICTED: beta-galactosidase 3-like [Jatropha curcas]
13 Hb_006499_020 0.1489423497 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
14 Hb_001622_020 0.1507168307 - - -
15 Hb_000373_060 0.154493114 - - PREDICTED: extensin-3 [Camelina sativa]
16 Hb_000054_130 0.1676335643 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
17 Hb_005155_030 0.1678804379 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
18 Hb_000751_060 0.1695343043 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
19 Hb_116190_010 0.1699936287 - - PREDICTED: uncharacterized protein LOC105118535 [Populus euphratica]
20 Hb_000567_150 0.170494417 - - cysteine protease, putative [Ricinus communis]

Gene co-expression network

sample Hb_001369_270 Hb_001369_270 Hb_000226_110 Hb_000226_110 Hb_001369_270--Hb_000226_110 Hb_110737_010 Hb_110737_010 Hb_001369_270--Hb_110737_010 Hb_016835_020 Hb_016835_020 Hb_001369_270--Hb_016835_020 Hb_060152_010 Hb_060152_010 Hb_001369_270--Hb_060152_010 Hb_003858_080 Hb_003858_080 Hb_001369_270--Hb_003858_080 Hb_003030_050 Hb_003030_050 Hb_001369_270--Hb_003030_050 Hb_006499_020 Hb_006499_020 Hb_000226_110--Hb_006499_020 Hb_026419_010 Hb_026419_010 Hb_000226_110--Hb_026419_010 Hb_116190_010 Hb_116190_010 Hb_000226_110--Hb_116190_010 Hb_003861_090 Hb_003861_090 Hb_000226_110--Hb_003861_090 Hb_000373_060 Hb_000373_060 Hb_000226_110--Hb_000373_060 Hb_001109_170 Hb_001109_170 Hb_110737_010--Hb_001109_170 Hb_110737_010--Hb_003030_050 Hb_000567_150 Hb_000567_150 Hb_110737_010--Hb_000567_150 Hb_004487_060 Hb_004487_060 Hb_110737_010--Hb_004487_060 Hb_001288_050 Hb_001288_050 Hb_110737_010--Hb_001288_050 Hb_005843_060 Hb_005843_060 Hb_016835_020--Hb_005843_060 Hb_016835_020--Hb_110737_010 Hb_016835_020--Hb_003030_050 Hb_029727_010 Hb_029727_010 Hb_016835_020--Hb_029727_010 Hb_167457_010 Hb_167457_010 Hb_016835_020--Hb_167457_010 Hb_000751_060 Hb_000751_060 Hb_060152_010--Hb_000751_060 Hb_168319_060 Hb_168319_060 Hb_060152_010--Hb_168319_060 Hb_000751_070 Hb_000751_070 Hb_060152_010--Hb_000751_070 Hb_000645_250 Hb_000645_250 Hb_060152_010--Hb_000645_250 Hb_001622_020 Hb_001622_020 Hb_060152_010--Hb_001622_020 Hb_060152_010--Hb_000226_110 Hb_003858_080--Hb_003861_090 Hb_001675_040 Hb_001675_040 Hb_003858_080--Hb_001675_040 Hb_003858_080--Hb_006499_020 Hb_003858_080--Hb_000373_060 Hb_168561_010 Hb_168561_010 Hb_003858_080--Hb_168561_010 Hb_097783_030 Hb_097783_030 Hb_003030_050--Hb_097783_030 Hb_002835_050 Hb_002835_050 Hb_003030_050--Hb_002835_050 Hb_000907_130 Hb_000907_130 Hb_003030_050--Hb_000907_130 Hb_005155_030 Hb_005155_030 Hb_003030_050--Hb_005155_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0626475 0.140372 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.190138 0.263634

CAGE analysis