Hb_000567_150

Information

Type -
Description -
Location Contig567: 180709-181981
Sequence    

Annotation

kegg
ID rcu:RCOM_1014880
description cysteine protease, putative (EC:1.3.1.74)
nr
ID XP_002522571.1
description cysteine protease, putative [Ricinus communis]
swissprot
ID A2XQE8
description Senescence-specific cysteine protease SAG39 OS=Oryza sativa subsp. indica GN=OsI_14861 PE=3 SV=1
trembl
ID B9S9A2
description Cysteine protease, putative OS=Ricinus communis GN=RCOM_1014880 PE=3 SV=1
Gene Ontology
ID GO:0008233
description cysteine

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49118: 180871-181521
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_150 0.0 - - cysteine protease, putative [Ricinus communis]
2 Hb_001288_050 0.0709396348 - - -
3 Hb_000751_070 0.0753871775 - - -
4 Hb_110737_010 0.1010864084 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
5 Hb_001005_040 0.1090171645 - - -
6 Hb_001109_170 0.1161326743 - - PREDICTED: urea-proton symporter DUR3 isoform X2 [Jatropha curcas]
7 Hb_060152_010 0.1206223985 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
8 Hb_000087_120 0.127334824 - - AMP dependent CoA ligase, putative [Ricinus communis]
9 Hb_002379_060 0.1302986997 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
10 Hb_000137_060 0.1391864515 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
11 Hb_003095_110 0.139799205 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
12 Hb_002016_130 0.1429827031 desease resistance Gene Name: ABC_membrane multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
13 Hb_025668_020 0.145553379 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000847_120 0.1468497281 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
15 Hb_000465_180 0.1472710712 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
16 Hb_004943_010 0.148179986 - - cationic amino acid transporter, putative [Ricinus communis]
17 Hb_004487_060 0.148189023 - - cytochrome P450, putative [Ricinus communis]
18 Hb_000416_010 0.1481904378 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
19 Hb_146930_010 0.1483093276 - - -
20 Hb_001597_090 0.1493482399 - - -

Gene co-expression network

sample Hb_000567_150 Hb_000567_150 Hb_001288_050 Hb_001288_050 Hb_000567_150--Hb_001288_050 Hb_000751_070 Hb_000751_070 Hb_000567_150--Hb_000751_070 Hb_110737_010 Hb_110737_010 Hb_000567_150--Hb_110737_010 Hb_001005_040 Hb_001005_040 Hb_000567_150--Hb_001005_040 Hb_001109_170 Hb_001109_170 Hb_000567_150--Hb_001109_170 Hb_060152_010 Hb_060152_010 Hb_000567_150--Hb_060152_010 Hb_001288_050--Hb_001005_040 Hb_001288_050--Hb_000751_070 Hb_001597_090 Hb_001597_090 Hb_001288_050--Hb_001597_090 Hb_001571_020 Hb_001571_020 Hb_001288_050--Hb_001571_020 Hb_002016_130 Hb_002016_130 Hb_001288_050--Hb_002016_130 Hb_146930_010 Hb_146930_010 Hb_000751_070--Hb_146930_010 Hb_000751_070--Hb_060152_010 Hb_000645_250 Hb_000645_250 Hb_000751_070--Hb_000645_250 Hb_000751_060 Hb_000751_060 Hb_000751_070--Hb_000751_060 Hb_110737_010--Hb_001109_170 Hb_003030_050 Hb_003030_050 Hb_110737_010--Hb_003030_050 Hb_001369_270 Hb_001369_270 Hb_110737_010--Hb_001369_270 Hb_004487_060 Hb_004487_060 Hb_110737_010--Hb_004487_060 Hb_110737_010--Hb_001288_050 Hb_001005_040--Hb_002016_130 Hb_029727_010 Hb_029727_010 Hb_001005_040--Hb_029727_010 Hb_000416_010 Hb_000416_010 Hb_001005_040--Hb_000416_010 Hb_001005_040--Hb_001109_170 Hb_167211_010 Hb_167211_010 Hb_001109_170--Hb_167211_010 Hb_010311_020 Hb_010311_020 Hb_001109_170--Hb_010311_020 Hb_001109_170--Hb_000416_010 Hb_124579_020 Hb_124579_020 Hb_001109_170--Hb_124579_020 Hb_000054_130 Hb_000054_130 Hb_001109_170--Hb_000054_130 Hb_060152_010--Hb_000751_060 Hb_168319_060 Hb_168319_060 Hb_060152_010--Hb_168319_060 Hb_060152_010--Hb_000645_250 Hb_001622_020 Hb_001622_020 Hb_060152_010--Hb_001622_020 Hb_000226_110 Hb_000226_110 Hb_060152_010--Hb_000226_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.557146 2.17662 2.22114 0.0368515 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 6.741 7.35541

CAGE analysis