Hb_029727_010

Information

Type -
Description -
Location Contig29727: 1093-2987
Sequence    

Annotation

kegg
ID tcc:TCM_045983
description Gag protease polyprotein-like protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID Q7XS22
description OSJNBa0080E14.14 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0080E14.14 PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029727_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_000169_100 0.0486650249 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
3 Hb_001005_040 0.0989291269 - - -
4 Hb_017225_030 0.1135382107 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
5 Hb_001288_050 0.1247481208 - - -
6 Hb_000260_730 0.1248432966 - - -
7 Hb_002631_270 0.128704821 transcription factor TF Family: MYB hypothetical protein POPTR_0005s09930g [Populus trichocarpa]
8 Hb_151870_010 0.1294561021 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
9 Hb_001597_090 0.1416010785 - - -
10 Hb_002016_130 0.1437796568 desease resistance Gene Name: ABC_membrane multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
11 Hb_001109_170 0.1441883305 - - PREDICTED: urea-proton symporter DUR3 isoform X2 [Jatropha curcas]
12 Hb_006807_010 0.1455762254 - - hypothetical protein JCGZ_20881 [Jatropha curcas]
13 Hb_005843_060 0.1474740257 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X3 [Nelumbo nucifera]
14 Hb_007676_060 0.1489953212 - - PREDICTED: cellulose synthase-like protein E2 [Pyrus x bretschneideri]
15 Hb_016835_020 0.1579283184 - - unnamed protein product [Coffea canephora]
16 Hb_155423_010 0.1612058431 - - -
17 Hb_001571_020 0.1646106117 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Citrus sinensis]
18 Hb_000567_150 0.1648443382 - - cysteine protease, putative [Ricinus communis]
19 Hb_170878_060 0.1668045153 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
20 Hb_110737_010 0.1671382736 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]

Gene co-expression network

sample Hb_029727_010 Hb_029727_010 Hb_000169_100 Hb_000169_100 Hb_029727_010--Hb_000169_100 Hb_001005_040 Hb_001005_040 Hb_029727_010--Hb_001005_040 Hb_017225_030 Hb_017225_030 Hb_029727_010--Hb_017225_030 Hb_001288_050 Hb_001288_050 Hb_029727_010--Hb_001288_050 Hb_000260_730 Hb_000260_730 Hb_029727_010--Hb_000260_730 Hb_002631_270 Hb_002631_270 Hb_029727_010--Hb_002631_270 Hb_000169_100--Hb_017225_030 Hb_006807_010 Hb_006807_010 Hb_000169_100--Hb_006807_010 Hb_000169_100--Hb_002631_270 Hb_151870_010 Hb_151870_010 Hb_000169_100--Hb_151870_010 Hb_007676_060 Hb_007676_060 Hb_000169_100--Hb_007676_060 Hb_002016_130 Hb_002016_130 Hb_001005_040--Hb_002016_130 Hb_001005_040--Hb_001288_050 Hb_000567_150 Hb_000567_150 Hb_001005_040--Hb_000567_150 Hb_000416_010 Hb_000416_010 Hb_001005_040--Hb_000416_010 Hb_001109_170 Hb_001109_170 Hb_001005_040--Hb_001109_170 Hb_017225_030--Hb_002631_270 Hb_008834_010 Hb_008834_010 Hb_017225_030--Hb_008834_010 Hb_017225_030--Hb_000260_730 Hb_017225_030--Hb_151870_010 Hb_001288_050--Hb_000567_150 Hb_000751_070 Hb_000751_070 Hb_001288_050--Hb_000751_070 Hb_001597_090 Hb_001597_090 Hb_001288_050--Hb_001597_090 Hb_001571_020 Hb_001571_020 Hb_001288_050--Hb_001571_020 Hb_001288_050--Hb_002016_130 Hb_000260_730--Hb_008834_010 Hb_001856_280 Hb_001856_280 Hb_000260_730--Hb_001856_280 Hb_000260_730--Hb_001005_040 Hb_000260_730--Hb_000169_100 Hb_002631_270--Hb_151870_010 Hb_155423_010 Hb_155423_010 Hb_002631_270--Hb_155423_010 Hb_009851_090 Hb_009851_090 Hb_002631_270--Hb_009851_090 Hb_002631_270--Hb_006807_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00954287 0.00857898 0.0263455 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0741091 0.130471

CAGE analysis