Hb_000169_100

Information

Type -
Description -
Location Contig169: 111709-115122
Sequence    

Annotation

kegg
ID fve:101299142
description LRR receptor-like serine/threonine-protein kinase EFR-like
nr
ID XP_004308937.2
description PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID B9RVA8
description Receptor-kinase, putative OS=Ricinus communis GN=RCOM_0901450 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000169_100 0.0 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
2 Hb_029727_010 0.0486650249 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_017225_030 0.1182592787 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
4 Hb_006807_010 0.1196338622 - - hypothetical protein JCGZ_20881 [Jatropha curcas]
5 Hb_002631_270 0.1293717976 transcription factor TF Family: MYB hypothetical protein POPTR_0005s09930g [Populus trichocarpa]
6 Hb_151870_010 0.1325281515 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
7 Hb_007676_060 0.1349683824 - - PREDICTED: cellulose synthase-like protein E2 [Pyrus x bretschneideri]
8 Hb_001005_040 0.1355201056 - - -
9 Hb_000260_730 0.137785316 - - -
10 Hb_170878_060 0.1447651807 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
11 Hb_001597_090 0.1455713616 - - -
12 Hb_155423_010 0.1478263082 - - -
13 Hb_001288_050 0.1528339134 - - -
14 Hb_001109_170 0.162561011 - - PREDICTED: urea-proton symporter DUR3 isoform X2 [Jatropha curcas]
15 Hb_005843_060 0.1684262066 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X3 [Nelumbo nucifera]
16 Hb_016835_020 0.1709218709 - - unnamed protein product [Coffea canephora]
17 Hb_008834_010 0.1716507801 - - hypothetical protein POPTR_0016s04660g [Populus trichocarpa]
18 Hb_003992_220 0.1752382294 - - s-receptor kinase, putative [Ricinus communis]
19 Hb_003450_010 0.1753096335 - - -
20 Hb_000567_270 0.1824657996 - - hypothetical protein L484_017162 [Morus notabilis]

Gene co-expression network

sample Hb_000169_100 Hb_000169_100 Hb_029727_010 Hb_029727_010 Hb_000169_100--Hb_029727_010 Hb_017225_030 Hb_017225_030 Hb_000169_100--Hb_017225_030 Hb_006807_010 Hb_006807_010 Hb_000169_100--Hb_006807_010 Hb_002631_270 Hb_002631_270 Hb_000169_100--Hb_002631_270 Hb_151870_010 Hb_151870_010 Hb_000169_100--Hb_151870_010 Hb_007676_060 Hb_007676_060 Hb_000169_100--Hb_007676_060 Hb_001005_040 Hb_001005_040 Hb_029727_010--Hb_001005_040 Hb_029727_010--Hb_017225_030 Hb_001288_050 Hb_001288_050 Hb_029727_010--Hb_001288_050 Hb_000260_730 Hb_000260_730 Hb_029727_010--Hb_000260_730 Hb_029727_010--Hb_002631_270 Hb_017225_030--Hb_002631_270 Hb_008834_010 Hb_008834_010 Hb_017225_030--Hb_008834_010 Hb_017225_030--Hb_000260_730 Hb_017225_030--Hb_151870_010 Hb_006807_010--Hb_151870_010 Hb_006807_010--Hb_002631_270 Hb_155423_010 Hb_155423_010 Hb_006807_010--Hb_155423_010 Hb_006807_010--Hb_017225_030 Hb_006807_010--Hb_029727_010 Hb_002631_270--Hb_151870_010 Hb_002631_270--Hb_155423_010 Hb_009851_090 Hb_009851_090 Hb_002631_270--Hb_009851_090 Hb_151870_010--Hb_155423_010 Hb_151870_010--Hb_009851_090 Hb_102761_010 Hb_102761_010 Hb_151870_010--Hb_102761_010 Hb_001597_090 Hb_001597_090 Hb_007676_060--Hb_001597_090 Hb_170878_060 Hb_170878_060 Hb_007676_060--Hb_170878_060 Hb_146930_010 Hb_146930_010 Hb_007676_060--Hb_146930_010 Hb_000675_040 Hb_000675_040 Hb_007676_060--Hb_000675_040 Hb_007676_060--Hb_001288_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.141421 0.0607919 0.361229 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.860473 1.45612

CAGE analysis