Hb_001005_040

Information

Type -
Description -
Location Contig1005: 32327-33729
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00312: 32791-33300 , PASA_asmbl_00316: 32092-32460
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001005_040 0.0 - - -
2 Hb_002016_130 0.0675117051 desease resistance Gene Name: ABC_membrane multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
3 Hb_001288_050 0.0746393024 - - -
4 Hb_029727_010 0.0989291269 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_000567_150 0.1090171645 - - cysteine protease, putative [Ricinus communis]
6 Hb_000416_010 0.1164381585 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
7 Hb_001109_170 0.1185675764 - - PREDICTED: urea-proton symporter DUR3 isoform X2 [Jatropha curcas]
8 Hb_017225_030 0.1195392642 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
9 Hb_000574_030 0.1251021641 desease resistance Gene Name: Glyco_hydro_38 Disease resistance protein RPS5, putative [Ricinus communis]
10 Hb_001301_010 0.1257060279 - - receptor protein kinase, putative [Ricinus communis]
11 Hb_110737_010 0.1303921567 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
12 Hb_004487_060 0.1336417818 - - cytochrome P450, putative [Ricinus communis]
13 Hb_000169_100 0.1355201056 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
14 Hb_000260_730 0.13719917 - - -
15 Hb_001571_020 0.141949536 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Citrus sinensis]
16 Hb_000137_060 0.1482801231 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
17 Hb_003992_220 0.1579952687 - - s-receptor kinase, putative [Ricinus communis]
18 Hb_000776_020 0.1580596805 transcription factor TF Family: M-type hypothetical protein JCGZ_25594 [Jatropha curcas]
19 Hb_010311_020 0.1582669899 - - lrr receptor protein kinase, putative [Ricinus communis]
20 Hb_009848_060 0.1598430601 - - unknown [Glycine max]

Gene co-expression network

sample Hb_001005_040 Hb_001005_040 Hb_002016_130 Hb_002016_130 Hb_001005_040--Hb_002016_130 Hb_001288_050 Hb_001288_050 Hb_001005_040--Hb_001288_050 Hb_029727_010 Hb_029727_010 Hb_001005_040--Hb_029727_010 Hb_000567_150 Hb_000567_150 Hb_001005_040--Hb_000567_150 Hb_000416_010 Hb_000416_010 Hb_001005_040--Hb_000416_010 Hb_001109_170 Hb_001109_170 Hb_001005_040--Hb_001109_170 Hb_000574_030 Hb_000574_030 Hb_002016_130--Hb_000574_030 Hb_004487_060 Hb_004487_060 Hb_002016_130--Hb_004487_060 Hb_002016_130--Hb_001288_050 Hb_002016_130--Hb_000416_010 Hb_001301_010 Hb_001301_010 Hb_002016_130--Hb_001301_010 Hb_001288_050--Hb_000567_150 Hb_000751_070 Hb_000751_070 Hb_001288_050--Hb_000751_070 Hb_001597_090 Hb_001597_090 Hb_001288_050--Hb_001597_090 Hb_001571_020 Hb_001571_020 Hb_001288_050--Hb_001571_020 Hb_000169_100 Hb_000169_100 Hb_029727_010--Hb_000169_100 Hb_017225_030 Hb_017225_030 Hb_029727_010--Hb_017225_030 Hb_029727_010--Hb_001288_050 Hb_000260_730 Hb_000260_730 Hb_029727_010--Hb_000260_730 Hb_002631_270 Hb_002631_270 Hb_029727_010--Hb_002631_270 Hb_000567_150--Hb_000751_070 Hb_110737_010 Hb_110737_010 Hb_000567_150--Hb_110737_010 Hb_000567_150--Hb_001109_170 Hb_060152_010 Hb_060152_010 Hb_000567_150--Hb_060152_010 Hb_010311_020 Hb_010311_020 Hb_000416_010--Hb_010311_020 Hb_124579_020 Hb_124579_020 Hb_000416_010--Hb_124579_020 Hb_185474_020 Hb_185474_020 Hb_000416_010--Hb_185474_020 Hb_000416_010--Hb_001301_010 Hb_000416_010--Hb_001109_170 Hb_000776_020 Hb_000776_020 Hb_000416_010--Hb_000776_020 Hb_167211_010 Hb_167211_010 Hb_001109_170--Hb_167211_010 Hb_001109_170--Hb_110737_010 Hb_001109_170--Hb_010311_020 Hb_001109_170--Hb_124579_020 Hb_000054_130 Hb_000054_130 Hb_001109_170--Hb_000054_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.145591 0.273023 0.264335 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.951127 1.55924

CAGE analysis