Hb_010311_020

Information

Type -
Description -
Location Contig10311: 28959-35913
Sequence    

Annotation

kegg
ID rcu:RCOM_1675270
description lrr receptor protein kinase, putative (EC:1.3.1.74)
nr
ID XP_002509489.1
description lrr receptor protein kinase, putative [Ricinus communis]
swissprot
ID C0LGK4
description Probable LRR receptor-like serine/threonine-protein kinase At2g16250 OS=Arabidopsis thaliana GN=At2g16250 PE=2 SV=1
trembl
ID B9RBF5
description Lrr receptor protein kinase, putative OS=Ricinus communis GN=RCOM_1675270 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at2g16250

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01284: 31235-33747 , PASA_asmbl_01285: 31581-32569
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010311_020 0.0 - - lrr receptor protein kinase, putative [Ricinus communis]
2 Hb_000416_010 0.0531393545 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
3 Hb_124579_020 0.0630983299 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
4 Hb_185474_020 0.0632951517 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
5 Hb_000380_140 0.0761266661 - - PREDICTED: uncharacterized protein LOC105628069 [Jatropha curcas]
6 Hb_002635_010 0.0923520823 - - homogentisate phytyl transferase [Hevea brasiliensis]
7 Hb_006198_040 0.0993450808 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001109_170 0.10098575 - - PREDICTED: urea-proton symporter DUR3 isoform X2 [Jatropha curcas]
9 Hb_003142_080 0.1025364875 - - receptor serine/threonine kinase, putative [Ricinus communis]
10 Hb_039435_020 0.1065876467 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
11 Hb_167211_010 0.1066928378 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
12 Hb_006970_120 0.1129573544 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000130_480 0.1155342614 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
14 Hb_002122_070 0.1162155174 - - unnamed protein product [Vitis vinifera]
15 Hb_000776_020 0.116658261 transcription factor TF Family: M-type hypothetical protein JCGZ_25594 [Jatropha curcas]
16 Hb_001652_130 0.1178698628 - - hypothetical protein B456_002G193900 [Gossypium raimondii]
17 Hb_007850_110 0.1252919857 - - MADS-box transcription factor 3 [Hevea brasiliensis]
18 Hb_006053_020 0.126903617 - - CAP [Theobroma cacao]
19 Hb_001301_010 0.1312516745 - - receptor protein kinase, putative [Ricinus communis]
20 Hb_000164_110 0.135760181 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]

Gene co-expression network

sample Hb_010311_020 Hb_010311_020 Hb_000416_010 Hb_000416_010 Hb_010311_020--Hb_000416_010 Hb_124579_020 Hb_124579_020 Hb_010311_020--Hb_124579_020 Hb_185474_020 Hb_185474_020 Hb_010311_020--Hb_185474_020 Hb_000380_140 Hb_000380_140 Hb_010311_020--Hb_000380_140 Hb_002635_010 Hb_002635_010 Hb_010311_020--Hb_002635_010 Hb_006198_040 Hb_006198_040 Hb_010311_020--Hb_006198_040 Hb_000416_010--Hb_124579_020 Hb_000416_010--Hb_185474_020 Hb_001301_010 Hb_001301_010 Hb_000416_010--Hb_001301_010 Hb_001109_170 Hb_001109_170 Hb_000416_010--Hb_001109_170 Hb_000776_020 Hb_000776_020 Hb_000416_010--Hb_000776_020 Hb_000130_480 Hb_000130_480 Hb_124579_020--Hb_000130_480 Hb_124579_020--Hb_185474_020 Hb_003142_080 Hb_003142_080 Hb_124579_020--Hb_003142_080 Hb_124579_020--Hb_002635_010 Hb_185474_020--Hb_003142_080 Hb_185474_020--Hb_006198_040 Hb_185474_020--Hb_000380_140 Hb_001652_130 Hb_001652_130 Hb_185474_020--Hb_001652_130 Hb_006970_120 Hb_006970_120 Hb_000380_140--Hb_006970_120 Hb_000380_140--Hb_002635_010 Hb_004946_010 Hb_004946_010 Hb_000380_140--Hb_004946_010 Hb_000380_140--Hb_124579_020 Hb_002635_010--Hb_000130_480 Hb_004607_160 Hb_004607_160 Hb_002635_010--Hb_004607_160 Hb_007850_110 Hb_007850_110 Hb_002635_010--Hb_007850_110 Hb_002635_010--Hb_003142_080 Hb_006198_040--Hb_003142_080 Hb_006198_040--Hb_000130_480 Hb_000033_010 Hb_000033_010 Hb_006198_040--Hb_000033_010 Hb_006198_040--Hb_124579_020 Hb_000836_030 Hb_000836_030 Hb_006198_040--Hb_000836_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0655345 0.189609 0.186052 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.23237 0.530812

CAGE analysis