Hb_000836_030

Information

Type -
Description -
Location Contig836: 44123-46049
Sequence    

Annotation

kegg
ID rcu:RCOM_1615890
description ubiquitin-conjugating enzyme h, putative (EC:6.3.2.19)
nr
ID XP_002511883.1
description ubiquitin-conjugating enzyme h, putative [Ricinus communis]
swissprot
ID P42749
description Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2
trembl
ID B9RDU4
description Ubiquitin-conjugating enzyme h, putative OS=Ricinus communis GN=RCOM_1615890 PE=3 SV=1
Gene Ontology
ID GO:0016874
description ubiquitin carrier protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59908: 44004-46033 , PASA_asmbl_59910: 44933-45057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_030 0.0 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
2 Hb_004607_160 0.0700774326 - - PREDICTED: uncharacterized protein LOC105134931 [Populus euphratica]
3 Hb_000784_060 0.0929926104 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006198_040 0.0935087438 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000130_480 0.0955864982 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
6 Hb_002095_020 0.0956619556 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
7 Hb_001369_390 0.0958466559 - - Glycerol-3-phosphate transporter, putative [Ricinus communis]
8 Hb_002635_010 0.0997073068 - - homogentisate phytyl transferase [Hevea brasiliensis]
9 Hb_029223_010 0.0998107246 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
10 Hb_017358_020 0.1046557792 - - hypothetical protein POPTR_0014s16490g [Populus trichocarpa]
11 Hb_000665_210 0.106068014 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
12 Hb_007894_080 0.1083589585 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000318_010 0.1104054506 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
14 Hb_001046_030 0.1108116196 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_082550_010 0.1112975957 - - hypothetical protein CISIN_1g0081081mg, partial [Citrus sinensis]
16 Hb_144449_010 0.1125479492 - - Potassium transporter, putative [Ricinus communis]
17 Hb_003142_080 0.1140206179 - - receptor serine/threonine kinase, putative [Ricinus communis]
18 Hb_003266_010 0.1142182167 - - hypothetical protein JCGZ_21945 [Jatropha curcas]
19 Hb_001278_090 0.1154743352 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
20 Hb_001629_050 0.1161781777 - - structural constituent of cell wall, putative [Ricinus communis]

Gene co-expression network

sample Hb_000836_030 Hb_000836_030 Hb_004607_160 Hb_004607_160 Hb_000836_030--Hb_004607_160 Hb_000784_060 Hb_000784_060 Hb_000836_030--Hb_000784_060 Hb_006198_040 Hb_006198_040 Hb_000836_030--Hb_006198_040 Hb_000130_480 Hb_000130_480 Hb_000836_030--Hb_000130_480 Hb_002095_020 Hb_002095_020 Hb_000836_030--Hb_002095_020 Hb_001369_390 Hb_001369_390 Hb_000836_030--Hb_001369_390 Hb_004607_160--Hb_000130_480 Hb_002635_010 Hb_002635_010 Hb_004607_160--Hb_002635_010 Hb_144449_010 Hb_144449_010 Hb_004607_160--Hb_144449_010 Hb_005332_050 Hb_005332_050 Hb_004607_160--Hb_005332_050 Hb_007850_110 Hb_007850_110 Hb_004607_160--Hb_007850_110 Hb_000665_210 Hb_000665_210 Hb_000784_060--Hb_000665_210 Hb_004466_090 Hb_004466_090 Hb_000784_060--Hb_004466_090 Hb_009421_070 Hb_009421_070 Hb_000784_060--Hb_009421_070 Hb_000784_060--Hb_001369_390 Hb_004374_030 Hb_004374_030 Hb_000784_060--Hb_004374_030 Hb_016277_030 Hb_016277_030 Hb_000784_060--Hb_016277_030 Hb_003142_080 Hb_003142_080 Hb_006198_040--Hb_003142_080 Hb_006198_040--Hb_000130_480 Hb_185474_020 Hb_185474_020 Hb_006198_040--Hb_185474_020 Hb_000033_010 Hb_000033_010 Hb_006198_040--Hb_000033_010 Hb_124579_020 Hb_124579_020 Hb_006198_040--Hb_124579_020 Hb_000130_480--Hb_002635_010 Hb_000130_480--Hb_124579_020 Hb_000130_480--Hb_003142_080 Hb_002095_020--Hb_001369_390 Hb_003266_010 Hb_003266_010 Hb_002095_020--Hb_003266_010 Hb_000868_130 Hb_000868_130 Hb_002095_020--Hb_000868_130 Hb_002095_020--Hb_004374_030 Hb_004204_220 Hb_004204_220 Hb_002095_020--Hb_004204_220 Hb_002095_020--Hb_000784_060 Hb_001369_390--Hb_004374_030 Hb_001369_390--Hb_016277_030 Hb_001046_030 Hb_001046_030 Hb_001369_390--Hb_001046_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.204262 11.3671 24.1921 42.0716 0.234328 0.0777843
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.256448 0.228646 20.8736 60.1866

CAGE analysis