Hb_005332_050

Information

Type -
Description -
Location Contig5332: 59248-62825
Sequence    

Annotation

kegg
ID pop:POPTR_0017s10650g
description POPTRDRAFT_1105031; hypothetical protein
nr
ID XP_002323998.1
description hypothetical protein POPTR_0017s10650g [Populus trichocarpa]
swissprot
ID P57758
description Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1
trembl
ID A9PDQ5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s10650g PE=2 SV=1
Gene Ontology
ID GO:0016020
description cystinosin homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005332_050 0.0 - - hypothetical protein POPTR_0017s10650g [Populus trichocarpa]
2 Hb_004607_160 0.0894301 - - PREDICTED: uncharacterized protein LOC105134931 [Populus euphratica]
3 Hb_167211_010 0.0991790214 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
4 Hb_000130_480 0.113653712 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
5 Hb_007850_110 0.1155350674 - - MADS-box transcription factor 3 [Hevea brasiliensis]
6 Hb_000836_030 0.1169600398 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
7 Hb_001778_040 0.1179593226 - - hypothetical protein VITISV_021035 [Vitis vinifera]
8 Hb_000313_230 0.1193064064 - - PREDICTED: uncharacterized protein LOC105636893 [Jatropha curcas]
9 Hb_006198_040 0.1206326662 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001629_050 0.127475572 - - structural constituent of cell wall, putative [Ricinus communis]
11 Hb_014967_020 0.1293910286 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_006594_080 0.1313818972 - - beta-glucosidase, putative [Ricinus communis]
13 Hb_002635_010 0.1325068948 - - homogentisate phytyl transferase [Hevea brasiliensis]
14 Hb_001622_020 0.1343147736 - - -
15 Hb_000258_210 0.1343335625 - - prenyl-dependent CAAX protease, putative [Ricinus communis]
16 Hb_000054_130 0.1343925112 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
17 Hb_001278_090 0.1362107785 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
18 Hb_124579_020 0.1384217502 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
19 Hb_000309_070 0.1391121965 - - PREDICTED: 2-methylene-furan-3-one reductase [Cucumis melo]
20 Hb_144449_010 0.1393791277 - - Potassium transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_005332_050 Hb_005332_050 Hb_004607_160 Hb_004607_160 Hb_005332_050--Hb_004607_160 Hb_167211_010 Hb_167211_010 Hb_005332_050--Hb_167211_010 Hb_000130_480 Hb_000130_480 Hb_005332_050--Hb_000130_480 Hb_007850_110 Hb_007850_110 Hb_005332_050--Hb_007850_110 Hb_000836_030 Hb_000836_030 Hb_005332_050--Hb_000836_030 Hb_001778_040 Hb_001778_040 Hb_005332_050--Hb_001778_040 Hb_004607_160--Hb_000836_030 Hb_004607_160--Hb_000130_480 Hb_002635_010 Hb_002635_010 Hb_004607_160--Hb_002635_010 Hb_144449_010 Hb_144449_010 Hb_004607_160--Hb_144449_010 Hb_004607_160--Hb_007850_110 Hb_000054_130 Hb_000054_130 Hb_167211_010--Hb_000054_130 Hb_167211_010--Hb_001778_040 Hb_001109_170 Hb_001109_170 Hb_167211_010--Hb_001109_170 Hb_001622_020 Hb_001622_020 Hb_167211_010--Hb_001622_020 Hb_124579_020 Hb_124579_020 Hb_167211_010--Hb_124579_020 Hb_000130_480--Hb_002635_010 Hb_006198_040 Hb_006198_040 Hb_000130_480--Hb_006198_040 Hb_000130_480--Hb_124579_020 Hb_003142_080 Hb_003142_080 Hb_000130_480--Hb_003142_080 Hb_000130_480--Hb_000836_030 Hb_006469_090 Hb_006469_090 Hb_007850_110--Hb_006469_090 Hb_017098_050 Hb_017098_050 Hb_007850_110--Hb_017098_050 Hb_001109_130 Hb_001109_130 Hb_007850_110--Hb_001109_130 Hb_007850_110--Hb_002635_010 Hb_007850_110--Hb_000130_480 Hb_000784_060 Hb_000784_060 Hb_000836_030--Hb_000784_060 Hb_000836_030--Hb_006198_040 Hb_002095_020 Hb_002095_020 Hb_000836_030--Hb_002095_020 Hb_001369_390 Hb_001369_390 Hb_000836_030--Hb_001369_390 Hb_001778_040--Hb_001622_020 Hb_001778_040--Hb_000054_130 Hb_000254_060 Hb_000254_060 Hb_001778_040--Hb_000254_060 Hb_003992_220 Hb_003992_220 Hb_001778_040--Hb_003992_220 Hb_001629_050 Hb_001629_050 Hb_001778_040--Hb_001629_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.15722 1.8617 4.05444 0 0.0510533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0414803 0.0326287 0.12128 3.28189 5.39649

CAGE analysis