Hb_001778_040

Information

Type -
Description -
Location Contig1778: 89824-93705
Sequence    

Annotation

kegg
ID sita:101776990
description uncharacterized LOC101776990
nr
ID CAN69397.1
description hypothetical protein VITISV_021035 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5AUE7
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021035 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001778_040 0.0 - - hypothetical protein VITISV_021035 [Vitis vinifera]
2 Hb_001622_020 0.0690428657 - - -
3 Hb_000054_130 0.0806819903 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
4 Hb_167211_010 0.0883978942 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
5 Hb_000254_060 0.0896683029 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003992_220 0.1083673691 - - s-receptor kinase, putative [Ricinus communis]
7 Hb_001629_050 0.1148583051 - - structural constituent of cell wall, putative [Ricinus communis]
8 Hb_005332_050 0.1179593226 - - hypothetical protein POPTR_0017s10650g [Populus trichocarpa]
9 Hb_000258_210 0.1226100536 - - prenyl-dependent CAAX protease, putative [Ricinus communis]
10 Hb_001607_070 0.1266810097 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
11 Hb_168319_060 0.127230005 - - PREDICTED: cytochrome P450 CYP749A22-like [Populus euphratica]
12 Hb_014967_020 0.1305722091 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_065521_010 0.132980692 - - PREDICTED: probable metal-nicotianamine transporter YSL5 [Jatropha curcas]
14 Hb_009641_040 0.1383976555 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
15 Hb_170878_060 0.1393091193 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
16 Hb_001971_050 0.140931734 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_000120_880 0.1430348865 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
18 Hb_000392_490 0.1447016757 - - PREDICTED: uncharacterized protein LOC105640495 isoform X1 [Jatropha curcas]
19 Hb_004607_160 0.1470999497 - - PREDICTED: uncharacterized protein LOC105134931 [Populus euphratica]
20 Hb_002308_060 0.1490156389 - - PREDICTED: cytochrome P450 704C1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001778_040 Hb_001778_040 Hb_001622_020 Hb_001622_020 Hb_001778_040--Hb_001622_020 Hb_000054_130 Hb_000054_130 Hb_001778_040--Hb_000054_130 Hb_167211_010 Hb_167211_010 Hb_001778_040--Hb_167211_010 Hb_000254_060 Hb_000254_060 Hb_001778_040--Hb_000254_060 Hb_003992_220 Hb_003992_220 Hb_001778_040--Hb_003992_220 Hb_001629_050 Hb_001629_050 Hb_001778_040--Hb_001629_050 Hb_001622_020--Hb_000054_130 Hb_001622_020--Hb_000254_060 Hb_001622_020--Hb_167211_010 Hb_060152_010 Hb_060152_010 Hb_001622_020--Hb_060152_010 Hb_168319_060 Hb_168319_060 Hb_001622_020--Hb_168319_060 Hb_000054_130--Hb_167211_010 Hb_181463_020 Hb_181463_020 Hb_000054_130--Hb_181463_020 Hb_001109_170 Hb_001109_170 Hb_000054_130--Hb_001109_170 Hb_000237_120 Hb_000237_120 Hb_000054_130--Hb_000237_120 Hb_167211_010--Hb_001109_170 Hb_124579_020 Hb_124579_020 Hb_167211_010--Hb_124579_020 Hb_005332_050 Hb_005332_050 Hb_167211_010--Hb_005332_050 Hb_000254_060--Hb_168319_060 Hb_065521_010 Hb_065521_010 Hb_000254_060--Hb_065521_010 Hb_029510_090 Hb_029510_090 Hb_000254_060--Hb_029510_090 Hb_000254_060--Hb_000054_130 Hb_170878_060 Hb_170878_060 Hb_003992_220--Hb_170878_060 Hb_003992_220--Hb_167211_010 Hb_002308_060 Hb_002308_060 Hb_003992_220--Hb_002308_060 Hb_001109_130 Hb_001109_130 Hb_003992_220--Hb_001109_130 Hb_001963_110 Hb_001963_110 Hb_003992_220--Hb_001963_110 Hb_004204_220 Hb_004204_220 Hb_001629_050--Hb_004204_220 Hb_001629_050--Hb_167211_010 Hb_000392_490 Hb_000392_490 Hb_001629_050--Hb_000392_490 Hb_002095_020 Hb_002095_020 Hb_001629_050--Hb_002095_020 Hb_003858_060 Hb_003858_060 Hb_001629_050--Hb_003858_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00877648 0.00831735 0.0310614 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0302734 0.0401038

CAGE analysis