Hb_000392_490

Information

Type -
Description -
Location Contig392: 388279-391371
Sequence    

Annotation

kegg
ID rcu:RCOM_1513720
description hypothetical protein
nr
ID XP_012080210.1
description PREDICTED: uncharacterized protein LOC105640495 isoform X1 [Jatropha curcas]
swissprot
ID B8XCH5
description Protein QUIRKY OS=Arabidopsis thaliana GN=QKY PE=2 SV=1
trembl
ID A0A067KG57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11586 PE=4 SV=1
Gene Ontology
ID GO:0005515
description multiple c2 and transmembrane domain-containing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39307: 388227-388471 , PASA_asmbl_39308: 388906-389181 , PASA_asmbl_39309: 389196-389545
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_490 0.0 - - PREDICTED: uncharacterized protein LOC105640495 isoform X1 [Jatropha curcas]
2 Hb_000309_070 0.074402043 - - PREDICTED: 2-methylene-furan-3-one reductase [Cucumis melo]
3 Hb_006916_140 0.1084715978 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
4 Hb_001629_050 0.1097427374 - - structural constituent of cell wall, putative [Ricinus communis]
5 Hb_005329_030 0.1113576168 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
6 Hb_026198_020 0.1146846711 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
7 Hb_000963_120 0.1151970506 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
8 Hb_094437_030 0.1183608781 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
9 Hb_094437_020 0.1210485533 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
10 Hb_004204_220 0.1224576798 - - -
11 Hb_002750_040 0.1230466142 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
12 Hb_004374_030 0.1284693215 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
13 Hb_002095_020 0.1296767884 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
14 Hb_006992_010 0.1300888891 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
15 Hb_002119_110 0.1310501207 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
16 Hb_005545_110 0.139820279 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
17 Hb_090390_010 0.1410826936 - - hypothetical protein POPTR_0006s28850g [Populus trichocarpa]
18 Hb_002391_240 0.1414148612 - - conserved hypothetical protein [Ricinus communis]
19 Hb_027472_190 0.1434460714 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
20 Hb_001778_040 0.1447016757 - - hypothetical protein VITISV_021035 [Vitis vinifera]

Gene co-expression network

sample Hb_000392_490 Hb_000392_490 Hb_000309_070 Hb_000309_070 Hb_000392_490--Hb_000309_070 Hb_006916_140 Hb_006916_140 Hb_000392_490--Hb_006916_140 Hb_001629_050 Hb_001629_050 Hb_000392_490--Hb_001629_050 Hb_005329_030 Hb_005329_030 Hb_000392_490--Hb_005329_030 Hb_026198_020 Hb_026198_020 Hb_000392_490--Hb_026198_020 Hb_000963_120 Hb_000963_120 Hb_000392_490--Hb_000963_120 Hb_000309_070--Hb_000963_120 Hb_004374_030 Hb_004374_030 Hb_000309_070--Hb_004374_030 Hb_002119_110 Hb_002119_110 Hb_000309_070--Hb_002119_110 Hb_006992_010 Hb_006992_010 Hb_000309_070--Hb_006992_010 Hb_002374_510 Hb_002374_510 Hb_000309_070--Hb_002374_510 Hb_006916_140--Hb_000963_120 Hb_006916_140--Hb_005329_030 Hb_009222_080 Hb_009222_080 Hb_006916_140--Hb_009222_080 Hb_000023_180 Hb_000023_180 Hb_006916_140--Hb_000023_180 Hb_094437_020 Hb_094437_020 Hb_006916_140--Hb_094437_020 Hb_004204_220 Hb_004204_220 Hb_001629_050--Hb_004204_220 Hb_167211_010 Hb_167211_010 Hb_001629_050--Hb_167211_010 Hb_002095_020 Hb_002095_020 Hb_001629_050--Hb_002095_020 Hb_003858_060 Hb_003858_060 Hb_001629_050--Hb_003858_060 Hb_001778_040 Hb_001778_040 Hb_001629_050--Hb_001778_040 Hb_005329_030--Hb_000023_180 Hb_005329_030--Hb_004374_030 Hb_005329_030--Hb_000963_120 Hb_005329_030--Hb_004204_220 Hb_000000_290 Hb_000000_290 Hb_005329_030--Hb_000000_290 Hb_002750_040 Hb_002750_040 Hb_026198_020--Hb_002750_040 Hb_113766_010 Hb_113766_010 Hb_026198_020--Hb_113766_010 Hb_002391_240 Hb_002391_240 Hb_026198_020--Hb_002391_240 Hb_090390_010 Hb_090390_010 Hb_026198_020--Hb_090390_010 Hb_026198_020--Hb_006992_010 Hb_000963_120--Hb_002119_110 Hb_000963_120--Hb_004374_030 Hb_016277_030 Hb_016277_030 Hb_000963_120--Hb_016277_030 Hb_012239_060 Hb_012239_060 Hb_000963_120--Hb_012239_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0773001 1.47761 1.03721 5.9336 0.0534013 0.0273823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0281009 0 0.0423222 2.61762 6.2785

CAGE analysis