Hb_003858_060

Information

Type -
Description -
Location Contig3858: 74869-78742
Sequence    

Annotation

kegg
ID tcc:TCM_026076
description Germin-like protein subfamily 1 member 18
nr
ID XP_007030274.1
description Germin-like protein subfamily 1 member 18 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061F161
description Germin-like protein subfamily 1 member 18 OS=Theobroma cacao GN=TCM_026076 PE=4 SV=1
Gene Ontology
ID GO:0005576
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003858_060 0.0 - - Germin-like protein subfamily 1 member 18 [Theobroma cacao]
2 Hb_004204_220 0.0708649992 - - -
3 Hb_000834_100 0.0918630818 - - PREDICTED: uncharacterized protein LOC105178355 [Sesamum indicum]
4 Hb_002876_280 0.1012258503 - - hypothetical protein RCOM_0686540 [Ricinus communis]
5 Hb_000856_210 0.1027872984 - - nitrate transporter, putative [Ricinus communis]
6 Hb_094437_020 0.1096804581 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
7 Hb_001629_050 0.112398989 - - structural constituent of cell wall, putative [Ricinus communis]
8 Hb_011161_090 0.1175858027 - - -
9 Hb_000245_100 0.1189827812 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
10 Hb_001305_020 0.1192281856 - - PREDICTED: uncharacterized protein LOC102623247 [Citrus sinensis]
11 Hb_002631_110 0.1216453717 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
12 Hb_000207_240 0.1225840609 - - hypothetical protein RCOM_0686540 [Ricinus communis]
13 Hb_003226_230 0.1245533527 - - PREDICTED: transposon Ty3-G Gag-Pol polyprotein [Phoenix dactylifera]
14 Hb_008461_070 0.1250881934 - - PREDICTED: ethylene-overproduction protein 1 isoform X1 [Jatropha curcas]
15 Hb_125961_010 0.1267091906 - - ATP binding protein, putative [Ricinus communis]
16 Hb_006355_070 0.1277718127 transcription factor TF Family: bHLH Phytochrome-interacting factor, putative [Ricinus communis]
17 Hb_005723_090 0.1305171803 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002902_070 0.1337647559 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
19 Hb_000622_030 0.1385728398 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
20 Hb_162676_010 0.1388870785 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003858_060 Hb_003858_060 Hb_004204_220 Hb_004204_220 Hb_003858_060--Hb_004204_220 Hb_000834_100 Hb_000834_100 Hb_003858_060--Hb_000834_100 Hb_002876_280 Hb_002876_280 Hb_003858_060--Hb_002876_280 Hb_000856_210 Hb_000856_210 Hb_003858_060--Hb_000856_210 Hb_094437_020 Hb_094437_020 Hb_003858_060--Hb_094437_020 Hb_001629_050 Hb_001629_050 Hb_003858_060--Hb_001629_050 Hb_004204_220--Hb_001629_050 Hb_011161_090 Hb_011161_090 Hb_004204_220--Hb_011161_090 Hb_002095_020 Hb_002095_020 Hb_004204_220--Hb_002095_020 Hb_004204_220--Hb_000834_100 Hb_002902_070 Hb_002902_070 Hb_004204_220--Hb_002902_070 Hb_000834_100--Hb_002902_070 Hb_001305_020 Hb_001305_020 Hb_000834_100--Hb_001305_020 Hb_000427_040 Hb_000427_040 Hb_000834_100--Hb_000427_040 Hb_000069_540 Hb_000069_540 Hb_000834_100--Hb_000069_540 Hb_011432_010 Hb_011432_010 Hb_002876_280--Hb_011432_010 Hb_002876_280--Hb_000856_210 Hb_002973_130 Hb_002973_130 Hb_002876_280--Hb_002973_130 Hb_037519_010 Hb_037519_010 Hb_002876_280--Hb_037519_010 Hb_145080_010 Hb_145080_010 Hb_002876_280--Hb_145080_010 Hb_019925_020 Hb_019925_020 Hb_000856_210--Hb_019925_020 Hb_000207_240 Hb_000207_240 Hb_000856_210--Hb_000207_240 Hb_006351_120 Hb_006351_120 Hb_000856_210--Hb_006351_120 Hb_000856_210--Hb_094437_020 Hb_094437_020--Hb_000207_240 Hb_006916_140 Hb_006916_140 Hb_094437_020--Hb_006916_140 Hb_000392_490 Hb_000392_490 Hb_094437_020--Hb_000392_490 Hb_094437_020--Hb_004204_220 Hb_167211_010 Hb_167211_010 Hb_001629_050--Hb_167211_010 Hb_001629_050--Hb_000392_490 Hb_001629_050--Hb_002095_020 Hb_001778_040 Hb_001778_040 Hb_001629_050--Hb_001778_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0968884 0.029768 0.139597 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0558873 0.21532

CAGE analysis