Hb_000427_040

Information

Type -
Description -
Location Contig427: 81382-90311
Sequence    

Annotation

kegg
ID rcu:RCOM_0422870
description Gibberellin receptor GID1, putative
nr
ID XP_002524110.1
description Gibberellin receptor GID1, putative [Ricinus communis]
swissprot
ID Q9FG13
description Probable carboxylesterase 15 OS=Arabidopsis thaliana GN=CXE15 PE=2 SV=1
trembl
ID B9SDP1
description Gibberellin receptor GID1, putative OS=Ricinus communis GN=RCOM_0422870 PE=4 SV=1
Gene Ontology
ID GO:0016787
description probable carboxylesterase 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42057: 81569-85015 , PASA_asmbl_42060: 85243-85448
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000427_040 0.0 - - Gibberellin receptor GID1, putative [Ricinus communis]
2 Hb_032779_010 0.0516202858 - - unnamed protein product [Vitis vinifera]
3 Hb_005051_010 0.0624868654 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
4 Hb_002902_070 0.0794552603 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
5 Hb_014700_030 0.0908579417 - - tryptophan synthase beta chain, putative [Ricinus communis]
6 Hb_001305_020 0.0920778135 - - PREDICTED: uncharacterized protein LOC102623247 [Citrus sinensis]
7 Hb_000069_540 0.0925534622 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
8 Hb_031862_120 0.1010652883 - - PREDICTED: root phototropism protein 3 [Jatropha curcas]
9 Hb_000215_290 0.1016065152 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
10 Hb_000834_100 0.1018058861 - - PREDICTED: uncharacterized protein LOC105178355 [Sesamum indicum]
11 Hb_022487_010 0.1042150195 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
12 Hb_004880_050 0.107043929 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000868_130 0.1072015959 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
14 Hb_143871_010 0.1074135769 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
15 Hb_007257_070 0.1087452698 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
16 Hb_000270_250 0.112958395 transcription factor TF Family: MYB hypothetical protein POPTR_0015s07900g [Populus trichocarpa]
17 Hb_001789_120 0.1140087801 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
18 Hb_004324_220 0.114178661 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
19 Hb_144703_010 0.1142994227 - - Phospholipase A 2A, IIA,PLA2A [Theobroma cacao]
20 Hb_005074_010 0.1149162421 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]

Gene co-expression network

sample Hb_000427_040 Hb_000427_040 Hb_032779_010 Hb_032779_010 Hb_000427_040--Hb_032779_010 Hb_005051_010 Hb_005051_010 Hb_000427_040--Hb_005051_010 Hb_002902_070 Hb_002902_070 Hb_000427_040--Hb_002902_070 Hb_014700_030 Hb_014700_030 Hb_000427_040--Hb_014700_030 Hb_001305_020 Hb_001305_020 Hb_000427_040--Hb_001305_020 Hb_000069_540 Hb_000069_540 Hb_000427_040--Hb_000069_540 Hb_032779_010--Hb_014700_030 Hb_004880_050 Hb_004880_050 Hb_032779_010--Hb_004880_050 Hb_001789_120 Hb_001789_120 Hb_032779_010--Hb_001789_120 Hb_032779_010--Hb_005051_010 Hb_032779_010--Hb_002902_070 Hb_005051_010--Hb_001305_020 Hb_005051_010--Hb_014700_030 Hb_000622_030 Hb_000622_030 Hb_005051_010--Hb_000622_030 Hb_000434_060 Hb_000434_060 Hb_005051_010--Hb_000434_060 Hb_002902_070--Hb_000069_540 Hb_000868_130 Hb_000868_130 Hb_002902_070--Hb_000868_130 Hb_002902_070--Hb_001305_020 Hb_000834_100 Hb_000834_100 Hb_002902_070--Hb_000834_100 Hb_144703_010 Hb_144703_010 Hb_002902_070--Hb_144703_010 Hb_014700_030--Hb_001789_120 Hb_014700_030--Hb_004880_050 Hb_010222_060 Hb_010222_060 Hb_014700_030--Hb_010222_060 Hb_013394_120 Hb_013394_120 Hb_014700_030--Hb_013394_120 Hb_132840_170 Hb_132840_170 Hb_014700_030--Hb_132840_170 Hb_001305_020--Hb_000622_030 Hb_005723_090 Hb_005723_090 Hb_001305_020--Hb_005723_090 Hb_001158_250 Hb_001158_250 Hb_001305_020--Hb_001158_250 Hb_001305_020--Hb_000834_100 Hb_000069_540--Hb_144703_010 Hb_019496_040 Hb_019496_040 Hb_000069_540--Hb_019496_040 Hb_000069_540--Hb_000868_130 Hb_008598_010 Hb_008598_010 Hb_000069_540--Hb_008598_010 Hb_002902_040 Hb_002902_040 Hb_000069_540--Hb_002902_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.92941 3.95584 6.49568 0 0.0359232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.65365 8.29404

CAGE analysis