Hb_000434_060

Information

Type desease resistance
Description Gene Name: hmm
Location Contig434: 44369-57734
Sequence    

Annotation

kegg
ID rcu:RCOM_0108660
description Disease resistance protein RPM1, putative (EC:3.1.3.16)
nr
ID XP_002532244.1
description Disease resistance protein RPM1, putative [Ricinus communis]
swissprot
ID Q39214
description Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1
trembl
ID B9T1X5
description Disease resistance protein RPM1, putative OS=Ricinus communis GN=RCOM_0108660 PE=4 SV=1
Gene Ontology
ID GO:0004721
description disease resistance protein rpm1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000434_060 0.0 desease resistance Gene Name: hmm Disease resistance protein RPM1, putative [Ricinus communis]
2 Hb_002168_070 0.075571114 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
3 Hb_005211_210 0.0835310619 - - lysine and histidine specific transporter family protein [Populus trichocarpa]
4 Hb_002043_070 0.0845122817 - - PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
5 Hb_009771_040 0.0845139805 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
6 Hb_005051_010 0.0897160142 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
7 Hb_007221_040 0.0981452123 - - PREDICTED: probable receptor-like protein kinase At5g24010 isoform X2 [Populus euphratica]
8 Hb_002053_190 0.0992650814 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
9 Hb_001289_010 0.099971655 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
10 Hb_026050_010 0.1077188276 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_000201_010 0.1085175885 - - unnamed protein product [Vitis vinifera]
12 Hb_002193_080 0.1101823534 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
13 Hb_007257_070 0.112031039 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
14 Hb_000574_230 0.1122608524 - - PREDICTED: leucine-rich repeat receptor protein kinase EXS-like isoform X2 [Vitis vinifera]
15 Hb_001405_170 0.1130241893 - - aspartyl protease family protein [Populus trichocarpa]
16 Hb_001242_040 0.1143027935 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
17 Hb_001269_240 0.1171934272 - - aquaporin NIP6.1 family protein [Populus trichocarpa]
18 Hb_001789_120 0.1219455705 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
19 Hb_000427_040 0.1225433786 - - Gibberellin receptor GID1, putative [Ricinus communis]
20 Hb_008689_010 0.1226068799 - - hypothetical protein POPTR_0006s25330g [Populus trichocarpa]

Gene co-expression network

sample Hb_000434_060 Hb_000434_060 Hb_002168_070 Hb_002168_070 Hb_000434_060--Hb_002168_070 Hb_005211_210 Hb_005211_210 Hb_000434_060--Hb_005211_210 Hb_002043_070 Hb_002043_070 Hb_000434_060--Hb_002043_070 Hb_009771_040 Hb_009771_040 Hb_000434_060--Hb_009771_040 Hb_005051_010 Hb_005051_010 Hb_000434_060--Hb_005051_010 Hb_007221_040 Hb_007221_040 Hb_000434_060--Hb_007221_040 Hb_002168_070--Hb_009771_040 Hb_002168_070--Hb_002043_070 Hb_002053_190 Hb_002053_190 Hb_002168_070--Hb_002053_190 Hb_001405_170 Hb_001405_170 Hb_002168_070--Hb_001405_170 Hb_002168_070--Hb_005211_210 Hb_002193_080 Hb_002193_080 Hb_005211_210--Hb_002193_080 Hb_008689_010 Hb_008689_010 Hb_005211_210--Hb_008689_010 Hb_005211_210--Hb_002043_070 Hb_000201_010 Hb_000201_010 Hb_005211_210--Hb_000201_010 Hb_005675_070 Hb_005675_070 Hb_005211_210--Hb_005675_070 Hb_002043_070--Hb_002053_190 Hb_002890_330 Hb_002890_330 Hb_002043_070--Hb_002890_330 Hb_002043_070--Hb_009771_040 Hb_026050_010 Hb_026050_010 Hb_009771_040--Hb_026050_010 Hb_002250_140 Hb_002250_140 Hb_009771_040--Hb_002250_140 Hb_000258_230 Hb_000258_230 Hb_009771_040--Hb_000258_230 Hb_173107_020 Hb_173107_020 Hb_009771_040--Hb_173107_020 Hb_001305_020 Hb_001305_020 Hb_005051_010--Hb_001305_020 Hb_000427_040 Hb_000427_040 Hb_005051_010--Hb_000427_040 Hb_014700_030 Hb_014700_030 Hb_005051_010--Hb_014700_030 Hb_032779_010 Hb_032779_010 Hb_005051_010--Hb_032779_010 Hb_000622_030 Hb_000622_030 Hb_005051_010--Hb_000622_030 Hb_004228_070 Hb_004228_070 Hb_007221_040--Hb_004228_070 Hb_002205_150 Hb_002205_150 Hb_007221_040--Hb_002205_150 Hb_021576_130 Hb_021576_130 Hb_007221_040--Hb_021576_130 Hb_003454_050 Hb_003454_050 Hb_007221_040--Hb_003454_050 Hb_012539_100 Hb_012539_100 Hb_007221_040--Hb_012539_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.212011 0.169203 0.357828 0.00349899 0.00314868
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0271135 0.281347

CAGE analysis