Hb_002043_070

Information

Type -
Description -
Location Contig2043: 107438-109462
Sequence    

Annotation

kegg
ID pop:POPTR_0012s13320g
description POPTRDRAFT_570465; hypothetical protein
nr
ID XP_012069037.1
description PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
swissprot
ID Q9SSM3
description Jacalin-related lectin 19 OS=Arabidopsis thaliana GN=JAL19 PE=2 SV=1
trembl
ID A0A067L9P5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24813 PE=4 SV=1
Gene Ontology
ID GO:0019762
description mannose-binding lectin superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20976: 108180-109448
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002043_070 0.0 - - PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
2 Hb_002168_070 0.0596690843 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
3 Hb_002053_190 0.0635427308 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
4 Hb_005211_210 0.0755136373 - - lysine and histidine specific transporter family protein [Populus trichocarpa]
5 Hb_002890_330 0.082494179 - - caspase, putative [Ricinus communis]
6 Hb_000434_060 0.0845122817 desease resistance Gene Name: hmm Disease resistance protein RPM1, putative [Ricinus communis]
7 Hb_009771_040 0.0866454759 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
8 Hb_001405_170 0.0921184549 - - aspartyl protease family protein [Populus trichocarpa]
9 Hb_001541_210 0.0936083625 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
10 Hb_002960_030 0.0954634566 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
11 Hb_000201_010 0.1036505503 - - unnamed protein product [Vitis vinifera]
12 Hb_000000_050 0.104065908 - - conserved hypothetical protein [Ricinus communis]
13 Hb_158189_010 0.105707295 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
14 Hb_000983_130 0.1079548531 - - transcription factor, putative [Ricinus communis]
15 Hb_005675_070 0.1083907937 - - hypothetical protein EUGRSUZ_K01585 [Eucalyptus grandis]
16 Hb_008689_010 0.1087486504 - - hypothetical protein POPTR_0006s25330g [Populus trichocarpa]
17 Hb_002193_080 0.1112707115 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
18 Hb_001289_010 0.1143721231 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
19 Hb_000620_040 0.1151704346 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
20 Hb_003893_130 0.1186042079 - - metal ion binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002043_070 Hb_002043_070 Hb_002168_070 Hb_002168_070 Hb_002043_070--Hb_002168_070 Hb_002053_190 Hb_002053_190 Hb_002043_070--Hb_002053_190 Hb_005211_210 Hb_005211_210 Hb_002043_070--Hb_005211_210 Hb_002890_330 Hb_002890_330 Hb_002043_070--Hb_002890_330 Hb_000434_060 Hb_000434_060 Hb_002043_070--Hb_000434_060 Hb_009771_040 Hb_009771_040 Hb_002043_070--Hb_009771_040 Hb_002168_070--Hb_009771_040 Hb_002168_070--Hb_000434_060 Hb_002168_070--Hb_002053_190 Hb_001405_170 Hb_001405_170 Hb_002168_070--Hb_001405_170 Hb_002168_070--Hb_005211_210 Hb_002053_190--Hb_002890_330 Hb_002053_190--Hb_001405_170 Hb_002960_030 Hb_002960_030 Hb_002053_190--Hb_002960_030 Hb_001541_210 Hb_001541_210 Hb_002053_190--Hb_001541_210 Hb_002193_080 Hb_002193_080 Hb_005211_210--Hb_002193_080 Hb_008689_010 Hb_008689_010 Hb_005211_210--Hb_008689_010 Hb_000201_010 Hb_000201_010 Hb_005211_210--Hb_000201_010 Hb_005675_070 Hb_005675_070 Hb_005211_210--Hb_005675_070 Hb_005211_210--Hb_000434_060 Hb_002890_330--Hb_001541_210 Hb_002890_330--Hb_002960_030 Hb_002890_330--Hb_001405_170 Hb_009222_040 Hb_009222_040 Hb_002890_330--Hb_009222_040 Hb_000434_060--Hb_009771_040 Hb_005051_010 Hb_005051_010 Hb_000434_060--Hb_005051_010 Hb_007221_040 Hb_007221_040 Hb_000434_060--Hb_007221_040 Hb_026050_010 Hb_026050_010 Hb_009771_040--Hb_026050_010 Hb_002250_140 Hb_002250_140 Hb_009771_040--Hb_002250_140 Hb_000258_230 Hb_000258_230 Hb_009771_040--Hb_000258_230 Hb_173107_020 Hb_173107_020 Hb_009771_040--Hb_173107_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.259825 12.0079 9.05542 27.4106 0.151677 0.236922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.856199 17.8569

CAGE analysis