Hb_002960_030

Information

Type -
Description -
Location Contig2960: 16778-17954
Sequence    

Annotation

kegg
ID pop:POPTR_0002s02190g
description POPTRDRAFT_410814; hypothetical protein
nr
ID XP_002301966.2
description hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
swissprot
ID P50699
description Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2
trembl
ID B9GQT3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s02190g PE=4 SV=2
Gene Ontology
ID GO:0009617
description thaumatin-like protein 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30943: 17234-18067
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002960_030 0.0 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
2 Hb_002053_190 0.0642934355 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
3 Hb_001405_170 0.0658026899 - - aspartyl protease family protein [Populus trichocarpa]
4 Hb_002534_070 0.0735091906 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
5 Hb_000983_130 0.0790534454 - - transcription factor, putative [Ricinus communis]
6 Hb_001541_210 0.0884263871 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
7 Hb_002890_330 0.0898072925 - - caspase, putative [Ricinus communis]
8 Hb_003023_030 0.0932223384 - - PREDICTED: MATE efflux family protein 5-like isoform X1 [Citrus sinensis]
9 Hb_004450_090 0.0946823055 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
10 Hb_002043_070 0.0954634566 - - PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
11 Hb_005741_030 0.0955120802 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
12 Hb_000020_210 0.0958856019 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
13 Hb_029791_010 0.0989431957 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
14 Hb_103225_030 0.0991373694 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
15 Hb_081864_010 0.1009826774 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_009771_040 0.1019184207 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
17 Hb_002168_070 0.1039100595 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
18 Hb_009222_040 0.1039351101 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
19 Hb_000000_260 0.1047898987 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
20 Hb_001427_100 0.1053815138 - - acc synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002960_030 Hb_002960_030 Hb_002053_190 Hb_002053_190 Hb_002960_030--Hb_002053_190 Hb_001405_170 Hb_001405_170 Hb_002960_030--Hb_001405_170 Hb_002534_070 Hb_002534_070 Hb_002960_030--Hb_002534_070 Hb_000983_130 Hb_000983_130 Hb_002960_030--Hb_000983_130 Hb_001541_210 Hb_001541_210 Hb_002960_030--Hb_001541_210 Hb_002890_330 Hb_002890_330 Hb_002960_030--Hb_002890_330 Hb_002053_190--Hb_002890_330 Hb_002043_070 Hb_002043_070 Hb_002053_190--Hb_002043_070 Hb_002053_190--Hb_001405_170 Hb_002168_070 Hb_002168_070 Hb_002053_190--Hb_002168_070 Hb_002053_190--Hb_001541_210 Hb_081864_010 Hb_081864_010 Hb_001405_170--Hb_081864_010 Hb_001405_170--Hb_001541_210 Hb_009771_040 Hb_009771_040 Hb_001405_170--Hb_009771_040 Hb_001405_170--Hb_002168_070 Hb_003023_030 Hb_003023_030 Hb_002534_070--Hb_003023_030 Hb_004450_090 Hb_004450_090 Hb_002534_070--Hb_004450_090 Hb_103225_030 Hb_103225_030 Hb_002534_070--Hb_103225_030 Hb_000646_040 Hb_000646_040 Hb_002534_070--Hb_000646_040 Hb_080601_010 Hb_080601_010 Hb_002534_070--Hb_080601_010 Hb_004102_200 Hb_004102_200 Hb_000983_130--Hb_004102_200 Hb_000983_130--Hb_004450_090 Hb_029238_040 Hb_029238_040 Hb_000983_130--Hb_029238_040 Hb_152277_010 Hb_152277_010 Hb_000983_130--Hb_152277_010 Hb_000000_260 Hb_000000_260 Hb_000983_130--Hb_000000_260 Hb_001541_210--Hb_002890_330 Hb_005741_030 Hb_005741_030 Hb_001541_210--Hb_005741_030 Hb_001541_210--Hb_002043_070 Hb_002890_330--Hb_002043_070 Hb_002890_330--Hb_001405_170 Hb_009222_040 Hb_009222_040 Hb_002890_330--Hb_009222_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.03335 2.03641 8.2507 0.0236232 0.026468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.222179 3.2873

CAGE analysis