Hb_003023_030

Information

Type -
Description -
Location Contig3023: 60542-65248
Sequence    

Annotation

kegg
ID cit:102617575
description MATE efflux family protein 5-like
nr
ID XP_006478383.1
description PREDICTED: MATE efflux family protein 5-like isoform X1 [Citrus sinensis]
swissprot
ID Q8GXM8
description MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1
trembl
ID A0A061FJK5
description MATE efflux family protein OS=Theobroma cacao GN=TCM_036271 PE=3 SV=1
Gene Ontology
ID GO:0016020
description mate efflux family protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31883: 60555-60684 , PASA_asmbl_31884: 62058-62803
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003023_030 0.0 - - PREDICTED: MATE efflux family protein 5-like isoform X1 [Citrus sinensis]
2 Hb_002534_070 0.0641694503 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
3 Hb_103225_030 0.0756458002 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
4 Hb_000120_560 0.0884438893 - - protein with unknown function [Ricinus communis]
5 Hb_002960_030 0.0932223384 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
6 Hb_128216_010 0.096289269 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
7 Hb_000646_040 0.0996025619 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like [Jatropha curcas]
8 Hb_080601_010 0.1017790594 - - metallothionein 3-like protein [Hevea brasiliensis]
9 Hb_004112_070 0.1026583372 - - -
10 Hb_002186_110 0.1034218007 - - hypothetical protein CICLE_v10024045mg, partial [Citrus clementina]
11 Hb_001953_010 0.1051059205 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
12 Hb_005741_030 0.105438524 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
13 Hb_000175_370 0.1073132399 - - hypothetical protein EUGRSUZ_F03862 [Eucalyptus grandis]
14 Hb_002186_170 0.1090543014 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
15 Hb_001408_080 0.1115561007 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
16 Hb_000020_210 0.1167655101 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
17 Hb_004450_090 0.1177099459 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
18 Hb_005111_020 0.11772367 - - hypothetical protein CISIN_1g0417821mg, partial [Citrus sinensis]
19 Hb_000000_320 0.1189449854 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
20 Hb_003032_110 0.1195237528 - - -

Gene co-expression network

sample Hb_003023_030 Hb_003023_030 Hb_002534_070 Hb_002534_070 Hb_003023_030--Hb_002534_070 Hb_103225_030 Hb_103225_030 Hb_003023_030--Hb_103225_030 Hb_000120_560 Hb_000120_560 Hb_003023_030--Hb_000120_560 Hb_002960_030 Hb_002960_030 Hb_003023_030--Hb_002960_030 Hb_128216_010 Hb_128216_010 Hb_003023_030--Hb_128216_010 Hb_000646_040 Hb_000646_040 Hb_003023_030--Hb_000646_040 Hb_002534_070--Hb_002960_030 Hb_004450_090 Hb_004450_090 Hb_002534_070--Hb_004450_090 Hb_002534_070--Hb_103225_030 Hb_002534_070--Hb_000646_040 Hb_080601_010 Hb_080601_010 Hb_002534_070--Hb_080601_010 Hb_005741_030 Hb_005741_030 Hb_103225_030--Hb_005741_030 Hb_001408_080 Hb_001408_080 Hb_103225_030--Hb_001408_080 Hb_002762_100 Hb_002762_100 Hb_103225_030--Hb_002762_100 Hb_000849_030 Hb_000849_030 Hb_103225_030--Hb_000849_030 Hb_000120_560--Hb_000646_040 Hb_000614_120 Hb_000614_120 Hb_000120_560--Hb_000614_120 Hb_000175_370 Hb_000175_370 Hb_000120_560--Hb_000175_370 Hb_000139_390 Hb_000139_390 Hb_000120_560--Hb_000139_390 Hb_002186_170 Hb_002186_170 Hb_000120_560--Hb_002186_170 Hb_002053_190 Hb_002053_190 Hb_002960_030--Hb_002053_190 Hb_001405_170 Hb_001405_170 Hb_002960_030--Hb_001405_170 Hb_000983_130 Hb_000983_130 Hb_002960_030--Hb_000983_130 Hb_001541_210 Hb_001541_210 Hb_002960_030--Hb_001541_210 Hb_002890_330 Hb_002890_330 Hb_002960_030--Hb_002890_330 Hb_002170_010 Hb_002170_010 Hb_128216_010--Hb_002170_010 Hb_004474_070 Hb_004474_070 Hb_128216_010--Hb_004474_070 Hb_112145_010 Hb_112145_010 Hb_128216_010--Hb_112145_010 Hb_002303_050 Hb_002303_050 Hb_128216_010--Hb_002303_050 Hb_001953_010 Hb_001953_010 Hb_128216_010--Hb_001953_010 Hb_002804_070 Hb_002804_070 Hb_128216_010--Hb_002804_070 Hb_003582_030 Hb_003582_030 Hb_000646_040--Hb_003582_030 Hb_007919_010 Hb_007919_010 Hb_000646_040--Hb_007919_010 Hb_000646_040--Hb_002186_170 Hb_000422_060 Hb_000422_060 Hb_000646_040--Hb_000422_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.60884 1.12375 5.03779 0.0279089 0.015127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0213543 1.22594

CAGE analysis