Hb_002762_100

Information

Type -
Description -
Location Contig2762: 107519-110371
Sequence    

Annotation

kegg
ID rcu:RCOM_1509970
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002511369.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID B9RAZ4
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1509970 PE=4 SV=1
Gene Ontology
ID GO:0016021
description lrr receptor-like serine threonine-protein kinase gso1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002762_100 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_103225_030 0.0907424409 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
3 Hb_005741_030 0.1091874774 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
4 Hb_000849_030 0.1095077435 - - PREDICTED: fimbrin-2 [Jatropha curcas]
5 Hb_002890_330 0.1100604403 - - caspase, putative [Ricinus communis]
6 Hb_081864_010 0.1151036886 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_000020_210 0.1159996083 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
8 Hb_002053_190 0.1167840268 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
9 Hb_001408_080 0.1174508284 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
10 Hb_039946_060 0.1195426101 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
11 Hb_001405_170 0.1200459754 - - aspartyl protease family protein [Populus trichocarpa]
12 Hb_009222_040 0.120518378 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
13 Hb_001999_200 0.1221255374 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
14 Hb_009785_030 0.1251717532 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
15 Hb_000085_410 0.1255671929 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
16 Hb_002960_030 0.126692549 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
17 Hb_001638_340 0.1268982138 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001541_210 0.1285414304 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
19 Hb_002534_070 0.1290147675 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
20 Hb_001427_100 0.1295427902 - - acc synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002762_100 Hb_002762_100 Hb_103225_030 Hb_103225_030 Hb_002762_100--Hb_103225_030 Hb_005741_030 Hb_005741_030 Hb_002762_100--Hb_005741_030 Hb_000849_030 Hb_000849_030 Hb_002762_100--Hb_000849_030 Hb_002890_330 Hb_002890_330 Hb_002762_100--Hb_002890_330 Hb_081864_010 Hb_081864_010 Hb_002762_100--Hb_081864_010 Hb_000020_210 Hb_000020_210 Hb_002762_100--Hb_000020_210 Hb_103225_030--Hb_005741_030 Hb_003023_030 Hb_003023_030 Hb_103225_030--Hb_003023_030 Hb_001408_080 Hb_001408_080 Hb_103225_030--Hb_001408_080 Hb_002534_070 Hb_002534_070 Hb_103225_030--Hb_002534_070 Hb_103225_030--Hb_000849_030 Hb_005741_030--Hb_001408_080 Hb_001427_100 Hb_001427_100 Hb_005741_030--Hb_001427_100 Hb_036520_030 Hb_036520_030 Hb_005741_030--Hb_036520_030 Hb_001541_210 Hb_001541_210 Hb_005741_030--Hb_001541_210 Hb_039946_060 Hb_039946_060 Hb_005741_030--Hb_039946_060 Hb_000849_030--Hb_001408_080 Hb_003466_010 Hb_003466_010 Hb_000849_030--Hb_003466_010 Hb_000849_030--Hb_036520_030 Hb_122951_010 Hb_122951_010 Hb_000849_030--Hb_122951_010 Hb_000849_030--Hb_001427_100 Hb_002053_190 Hb_002053_190 Hb_002890_330--Hb_002053_190 Hb_002043_070 Hb_002043_070 Hb_002890_330--Hb_002043_070 Hb_002890_330--Hb_001541_210 Hb_002960_030 Hb_002960_030 Hb_002890_330--Hb_002960_030 Hb_001405_170 Hb_001405_170 Hb_002890_330--Hb_001405_170 Hb_009222_040 Hb_009222_040 Hb_002890_330--Hb_009222_040 Hb_081864_010--Hb_001405_170 Hb_010174_200 Hb_010174_200 Hb_081864_010--Hb_010174_200 Hb_081864_010--Hb_002960_030 Hb_081864_010--Hb_002053_190 Hb_081864_010--Hb_000020_210 Hb_000020_210--Hb_009222_040 Hb_005111_020 Hb_005111_020 Hb_000020_210--Hb_005111_020 Hb_000020_210--Hb_001427_100 Hb_000020_210--Hb_001405_170 Hb_000020_210--Hb_122951_010 Hb_000020_210--Hb_039946_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.121242 1.79287 1.85445 5.44313 0.0401254 0.0369401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0153201 0.0120556 0.0921643 0.090878 1.77309

CAGE analysis