Hb_005111_020

Information

Type -
Description -
Location Contig5111: 21220-24277
Sequence    

Annotation

kegg
ID tcc:TCM_019574
description Receptor like protein 6, putative
nr
ID KDO58406.1
description hypothetical protein CISIN_1g0417821mg, partial [Citrus sinensis]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID A0A067F5C7
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0417821mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005111_020 0.0 - - hypothetical protein CISIN_1g0417821mg, partial [Citrus sinensis]
2 Hb_001110_060 0.0631269293 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
3 Hb_000020_210 0.0722136196 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
4 Hb_001408_080 0.0732158296 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
5 Hb_001427_100 0.0738107698 - - acc synthase, putative [Ricinus communis]
6 Hb_000000_320 0.0773262595 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
7 Hb_122951_010 0.0877218 - - PREDICTED: uncharacterized protein LOC105639235 [Jatropha curcas]
8 Hb_004112_070 0.0904247178 - - -
9 Hb_000849_030 0.0956658246 - - PREDICTED: fimbrin-2 [Jatropha curcas]
10 Hb_039946_060 0.1056453195 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
11 Hb_000739_190 0.1059406442 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
12 Hb_043630_030 0.1078433585 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
13 Hb_036520_030 0.1127621442 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
14 Hb_001856_130 0.115763608 - - hypothetical protein CISIN_1g022795mg [Citrus sinensis]
15 Hb_000139_520 0.116042205 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
16 Hb_003466_010 0.1168720821 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
17 Hb_000120_560 0.1174009935 - - protein with unknown function [Ricinus communis]
18 Hb_003023_030 0.11772367 - - PREDICTED: MATE efflux family protein 5-like isoform X1 [Citrus sinensis]
19 Hb_001022_070 0.1180329617 - - cell wall invertase [Manihot esculenta]
20 Hb_009222_040 0.1182976245 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]

Gene co-expression network

sample Hb_005111_020 Hb_005111_020 Hb_001110_060 Hb_001110_060 Hb_005111_020--Hb_001110_060 Hb_000020_210 Hb_000020_210 Hb_005111_020--Hb_000020_210 Hb_001408_080 Hb_001408_080 Hb_005111_020--Hb_001408_080 Hb_001427_100 Hb_001427_100 Hb_005111_020--Hb_001427_100 Hb_000000_320 Hb_000000_320 Hb_005111_020--Hb_000000_320 Hb_122951_010 Hb_122951_010 Hb_005111_020--Hb_122951_010 Hb_001110_060--Hb_001408_080 Hb_003032_110 Hb_003032_110 Hb_001110_060--Hb_003032_110 Hb_001110_060--Hb_001427_100 Hb_036520_030 Hb_036520_030 Hb_001110_060--Hb_036520_030 Hb_000085_410 Hb_000085_410 Hb_001110_060--Hb_000085_410 Hb_009222_040 Hb_009222_040 Hb_000020_210--Hb_009222_040 Hb_000020_210--Hb_001427_100 Hb_001405_170 Hb_001405_170 Hb_000020_210--Hb_001405_170 Hb_000020_210--Hb_122951_010 Hb_039946_060 Hb_039946_060 Hb_000020_210--Hb_039946_060 Hb_000849_030 Hb_000849_030 Hb_001408_080--Hb_000849_030 Hb_001408_080--Hb_001427_100 Hb_012132_050 Hb_012132_050 Hb_001408_080--Hb_012132_050 Hb_001408_080--Hb_036520_030 Hb_001427_100--Hb_039946_060 Hb_010164_030 Hb_010164_030 Hb_001427_100--Hb_010164_030 Hb_000012_350 Hb_000012_350 Hb_001427_100--Hb_000012_350 Hb_001953_010 Hb_001953_010 Hb_000000_320--Hb_001953_010 Hb_004112_070 Hb_004112_070 Hb_000000_320--Hb_004112_070 Hb_001022_070 Hb_001022_070 Hb_000000_320--Hb_001022_070 Hb_003427_020 Hb_003427_020 Hb_000000_320--Hb_003427_020 Hb_004474_070 Hb_004474_070 Hb_000000_320--Hb_004474_070 Hb_043630_030 Hb_043630_030 Hb_122951_010--Hb_043630_030 Hb_017862_030 Hb_017862_030 Hb_122951_010--Hb_017862_030 Hb_002522_040 Hb_002522_040 Hb_122951_010--Hb_002522_040 Hb_122951_010--Hb_000849_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.173584 0.236782 0.640481 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0184939 0.145791

CAGE analysis